Assembly
ASM3752003v1
BioProject PRJNA1087353 · BioSample SAMN40441225
GENOME-RESOLVED EVIDENCE
GCA_037520035.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3495578 bp · GC 28.500%
Completeness 95.850% · contamination 5.260%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY36_06900 | WXM48902.1 | OG0000061 | CP148712.1:1541162–1542514 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY36_00675 | WXM47713.1 | OG0000131 | CP148712.1:152193–153146 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY36_06890 | WXM48900.1 | OG0000212 | CP148712.1:1540237–1540728 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY36_13560 | WXM47256.1 | OG0000229 | CP148712.1:2962261–2963109 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY36_12955 | WXM47162.1 | OG0000234 | CP148712.1:2846778–2847956 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY36_06895 | WXM48901.1 | OG0000785 | CP148712.1:1540731–1541150 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY36_14860 | WXM47486.1 | OG0001124 | CP148712.1:3219831–3222428 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY36_01715 | WXM47905.1 | OG0001228 | CP148712.1:397020–398543 + | L-lactate permease [Clostridium perfringens] |
| crtWHY36_13580 | WXM47260.1 | OG0001394 | CP148712.1:2966236–2967018 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY36_00635 | WXM47705.1 | OG0001639 | CP148712.1:141547–142323 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.