Assembly
ASM3752116v1
BioProject PRJNA1087353 · BioSample SAMN40441224
GENOME-RESOLVED EVIDENCE
GCA_037521165.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3508746 bp · GC 28.500%
Completeness 95.850% · contamination 5.350%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY22_06305 | WXM51813.1 | OG0000061 | CP148716.1:1358642–1359994 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY22_12535 | WXM50093.1 | OG0000131 | CP148716.1:2748010–2748963 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY22_06315 | WXM51815.1 | OG0000212 | CP148716.1:1360428–1360919 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY22_15200 | WXM50551.1 | OG0000229 | CP148716.1:3289431–3290279 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY22_00250 | WXM50645.1 | OG0000234 | CP148716.1:52945–54123 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY22_06310 | WXM51814.1 | OG0000785 | CP148716.1:1360006–1360425 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY22_13900 | WXM50320.1 | OG0001124 | CP148716.1:3030113–3032710 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY22_11495 | WXM49901.1 | OG0001228 | CP148716.1:2502613–2504136 - | L-lactate permease [Clostridium perfringens] |
| crtWHY22_15180 | WXM50547.1 | OG0001394 | CP148716.1:3285522–3286304 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY22_12575 | WXM50101.1 | OG0001639 | CP148716.1:2758833–2759609 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.