Assembly
ASM3752207v1
BioProject PRJNA1087353 · BioSample SAMN40441223
GENOME-RESOLVED EVIDENCE
GCA_037522075.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3550981 bp · GC 28.500%
Completeness 95.870% · contamination 7.230%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY18_06140 | WXM54967.1 | OG0000061 | CP148720.1:1342479–1343831 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY18_12675 | WXM53271.1 | OG0000131 | CP148720.1:2808955–2809908 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY18_06150 | WXM54969.1 | OG0000212 | CP148720.1:1344265–1344756 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY18_15360 | WXM53733.1 | OG0000229 | CP148720.1:3353415–3354263 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY18_00250 | WXM53838.1 | OG0000234 | CP148720.1:52957–54135 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY18_06145 | WXM54968.1 | OG0000785 | CP148720.1:1343843–1344262 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY18_14055 | WXM53502.1 | OG0001124 | CP148720.1:3094099–3096696 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| rnfAWHY18_06190 | WXM54977.1 | OG0001328 | CP148720.1:1350823–1351398 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtWHY18_15340 | WXM53729.1 | OG0001394 | CP148720.1:3349507–3350289 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY18_12730 | WXM53282.1 | OG0001639 | CP148720.1:2822853–2823629 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| fabGWHY18_07225 | WXM55180.1 | OG0002940 | CP148720.1:1564666–1565427 - | 3-oxoacyl-ACP reductase family protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.