Assembly
ASM3752294v1
BioProject PRJNA1087353 · BioSample SAMN40441222
GENOME-RESOLVED EVIDENCE
GCA_037522945.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3496822 bp · GC 28.500%
Completeness 96.700% · contamination 4.400%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY67_06220 | WXM58105.1 | OG0000061 | CP148725.1:1427851–1429203 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY67_00315 | WXM56986.1 | OG0000131 | CP148725.1:79098–80051 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY67_06210 | WXM58103.1 | OG0000212 | CP148725.1:1426926–1427417 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY67_12865 | WXM56512.1 | OG0000229 | CP148725.1:2844807–2845655 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY67_12205 | WXM56407.1 | OG0000234 | CP148725.1:2720402–2721580 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY67_06215 | WXM58104.1 | OG0000785 | CP148725.1:1427420–1427839 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY67_14265 | WXM56760.1 | OG0001124 | CP148725.1:3120280–3122877 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY67_01355 | WXM57177.1 | OG0001228 | CP148725.1:323929–325452 + | L-lactate permease [Clostridium perfringens] |
| crtWHY67_12885 | WXM56516.1 | OG0001394 | CP148725.1:2848782–2849564 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY67_00275 | WXM56978.1 | OG0001639 | CP148725.1:68452–69228 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.