Assembly
ASM3752388v1
BioProject PRJNA1087353 · BioSample SAMN40441221
GENOME-RESOLVED EVIDENCE
GCA_037523885.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3399118 bp · GC 28.500%
Completeness 97.750% · contamination 4.180%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY43_06080 | WXM61143.1 | OG0000061 | CP148729.1:1423052–1424404 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY43_00315 | WXM60044.1 | OG0000131 | CP148729.1:79078–80031 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY43_06070 | WXM61141.1 | OG0000212 | CP148729.1:1422127–1422618 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY43_12460 | WXM59585.1 | OG0000229 | CP148729.1:2795432–2796280 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY43_11860 | WXM59492.1 | OG0000234 | CP148729.1:2680282–2681460 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY43_06075 | WXM61142.1 | OG0000785 | CP148729.1:1422621–1423040 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY43_13760 | WXM59816.1 | OG0001124 | CP148729.1:3052720–3055317 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY43_01385 | WXM60242.1 | OG0001228 | CP148729.1:328897–330429 + | L-lactate permease [Clostridium perfringens] |
| rnfAWHY43_06030 | WXM61133.1 | OG0001328 | CP148729.1:1415485–1416060 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtWHY43_12480 | WXM59589.1 | OG0001394 | CP148729.1:2799407–2800189 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY43_00275 | WXM60036.1 | OG0001639 | CP148729.1:68432–69208 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.