Assembly
ASM3752479v1
BioProject PRJNA1087353 · BioSample SAMN40441220
GENOME-RESOLVED EVIDENCE
GCA_037524795.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3460720 bp · GC 28.500%
Completeness 96.570% · contamination 4.380%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY21_06620 | WXM64159.1 | OG0000061 | CP148733.1:1512538–1513890 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY21_00670 | WXM63032.1 | OG0000131 | CP148733.1:151400–152353 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY21_06610 | WXM64157.1 | OG0000212 | CP148733.1:1511613–1512104 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY21_12865 | WXM62550.1 | OG0000229 | CP148733.1:2854791–2855639 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY21_12265 | WXM62457.1 | OG0000234 | CP148733.1:2739466–2740644 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY21_06615 | WXM64158.1 | OG0000785 | CP148733.1:1512107–1512526 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY21_14235 | WXM62792.1 | OG0001124 | CP148733.1:3129472–3132069 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY21_01880 | WXM63253.1 | OG0001228 | CP148733.1:427990–429513 + | L-lactate permease [Clostridium perfringens] |
| crtWHY21_12885 | WXM62554.1 | OG0001394 | CP148733.1:2858766–2859548 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY21_00630 | WXM63024.1 | OG0001639 | CP148733.1:140754–141530 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.