Assembly
ASM3995509v1
BioProject PRJNA1104830 · BioSample SAMN41088281
GENOME-RESOLVED EVIDENCE
GCA_039955095.1
Limosilactobacillus allomucosae · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2356337 bp · GC 47.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_347980568.1 · carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 321.300 / 0.95200 | Bridge orthogroup OG0001120 |
| accBWP_347980566.1 · biotin/lipoyl-containing protein | Medium | Approved candidateverified from NCBI entries and literature | 120.400 / 0.98800 | Profile only |
| accBWP_347953346.1 · biotin/lipoyl-containing protein | Medium | Approved candidateverified from NCBI entries and literature | 112.100 / 0.98800 | Profile only |
| accCWP_006500447.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 647.800 / 0.99300 | Annotation: gene_symbol |
| accDWP_347980567.1 · acetyl-CoA carboxylase carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support | 353.100 / 0.94500 | Bridge orthogroup OG0000844 |
| adhEWP_347980553.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1075.000 / 0.99000 | Bridge orthogroup OG0002334 |
| fabFWP_347963269.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 522.400 / 0.98800 | Annotation: gene_symbol |
| fabGWP_347980565.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 223.100 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_347980569.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 341.100 / 0.96900 | Annotation: gene_symbol |
| fabZWP_006500448.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 169.000 / 0.76000 | Bridge orthogroup OG0000074 |
| fabZWP_033934303.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 137.500 / 0.76500 | Bridge orthogroup OG0000074 |
| thlWP_347980736.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 521.600 / 0.99700 | Bridge orthogroup OG0000010 |
| fabGWP_347980569.1 · enoyl-ACP reductase FabI | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 72.800 / 0.98000 | Profile only |
| accCWP_347979983.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 536.000 / 0.98400 | Profile only |
| accCWP_347980570.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 529.700 / 0.98400 | Profile only |
| fabGWP_347980310.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.800 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_347963768.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.800 / 0.98800 | Profile only |
| fabGWP_347980905.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.600 / 0.98000 | Bridge orthogroup OG0000008 |
| fabGWP_347980386.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.200 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_270635736.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.500 / 0.98400 | Profile only |
| fabGWP_180305144.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.500 / 0.89100 | Bridge orthogroup OG0000242 |
| fabGWP_347980070.1 · oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 147.000 / 0.75800 | Bridge orthogroup OG0000242 |
| fabGWP_347980776.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 142.600 / 0.96400 | Profile only |
| fabGWP_347980726.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 140.200 / 0.96800 | Profile only |
| fabGWP_347979873.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 122.200 / 0.77000 | Bridge orthogroup OG0000242 |
| fabGWP_347980403.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 105.100 / 0.76600 | Bridge orthogroup OG0000242 |
| fabHWP_048345404.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 269.300 / 0.98500 | Profile only |
| fabLWP_347980310.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.800 / 0.97200 | Profile only |
| fabLWP_347963768.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.200 / 0.98000 | Profile only |
| fabLWP_347980565.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.300 / 0.97600 | Profile only |
| fabLWP_270635736.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 162.000 / 0.98400 | Profile only |
| fabLWP_347980386.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 161.300 / 0.99200 | Profile only |
| fabLWP_347980776.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 146.000 / 0.91700 | Profile only |
| fabLWP_347980905.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 145.800 / 0.97600 | Profile only |
| fabLWP_347980726.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 143.800 / 0.91700 | Profile only |
| fabLWP_180305144.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 142.200 / 0.89700 | Profile only |
| fabLWP_347980070.1 · oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 112.400 / 0.76600 | Profile only |
| ldhWP_033935623.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 376.000 / 0.98400 | Profile only |
| ldhWP_347953291.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 360.000 / 0.98400 | Profile only |
| ldhWP_347964048.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 313.400 / 0.97500 | Profile only |
| ldhWP_347953849.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 263.200 / 0.97500 | Profile only |
| ldhWP_347952730.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 241.400 / 0.96500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.