Assembly
LT_LAbrini
BioProject PRJNA896243 · BioSample SAMN31538715
GENOME-RESOLVED EVIDENCE
GCA_040166795.1
Clostridium autoethanogenum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4349910 bp · GC 31.000%
Completeness 98.760% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLAbrini_10200 | XBS26541.1 | OG0000061 | CP110420.1:2185593–2186936 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium autoethanogenum] |
| accBLAbrini_00635 | XBS28508.1 | OG0000212 | CP110420.1:142418–142636 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium autoethanogenum] |
| accBLAbrini_10210 | XBS26543.1 | OG0000212 | CP110420.1:2187439–2187951 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium autoethanogenum] |
| thlLAbrini_02050 | XBS28780.1 | OG0000234 | CP110420.1:465821–467020 - | acetyl-CoA acetyltransferase [Clostridium autoethanogenum] |
| fabZLAbrini_10205 | XBS26542.1 | OG0000785 | CP110420.1:2186961–2187416 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium autoethanogenum] |
| adhELAbrini_18700 | XBS28100.1 | OG0001124 | CP110420.1:4030737–4033349 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium autoethanogenum] |
| adhELAbrini_18705 | XBS28101.1 | OG0001124 | CP110420.1:4033501–4036134 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium autoethanogenum] |
| lctPLAbrini_01195 | XBS28619.1 | OG0001228 | CP110420.1:267625–269151 - | L-lactate permease [Clostridium autoethanogenum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.