Assembly
OU_Lcav
BioProject PRJNA1112399 · BioSample SAMN41424284
GENOME-RESOLVED EVIDENCE
GCA_040207125.1
Lacrimispora sp. BS-2 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4489992 bp · GC 44.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_349945434.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 156.400 / 0.98800 | Annotation: gene_symbol |
| accDWP_349945429.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 435.100 / 0.98600 | Bridge orthogroup OG0000844 |
| adhEWP_349948941.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1530.700 / 0.99400 | Bridge orthogroup OG0002334 |
| bcdWP_349947237.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 447.600 / 0.99700 | Annotation: bcd_etfAB_neighborhood |
| crtWP_349947233.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 355.400 / 0.96900 | Bridge orthogroup OG0002531 |
| etfAWP_349947243.1 · FAD-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 446.000 / 0.98200 | Bridge orthogroup OG0002903 |
| etfAWP_349947477.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 439.300 / 0.97900 | Bridge orthogroup OG0001385 |
| etfBWP_349947213.1 · electron transfer flavoprotein subunit beta | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 369.400 / 1.00000 | Annotation: gene_symbol |
| etfBWP_349947241.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 358.400 / 1.00000 | Bridge orthogroup OG0002348 |
| etfBWP_349947478.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 347.000 / 0.98500 | Bridge orthogroup OG0001139 |
| fabDWP_349945439.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 320.600 / 0.96500 | Annotation: gene_symbol |
| fabFWP_349945436.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 571.900 / 0.99300 | Annotation: gene_symbol |
| fabGWP_349945437.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 261.200 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_349945441.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 497.800 / 0.97100 | Annotation: gene_symbol |
| fabZWP_349945432.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 198.600 / 0.76000 | Bridge orthogroup OG0000074 |
| lctPWP_349947240.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 698.500 / 0.99000 | Bridge orthogroup OG0000731 |
| rnfAWP_313583106.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 268.400 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_349948524.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 340.800 / 0.92500 | Bridge orthogroup OG0001404 |
| rnfCWP_349948528.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 386.600 / 0.74600 | Bridge orthogroup OG0001114 |
| rnfDWP_349948527.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 326.000 / 0.93800 | Bridge orthogroup OG0001182 |
| rnfEWP_349948525.1 · electron transport complex subunit E | High | Approved candidatestrong profile and bridge orthogroup support | 272.600 / 0.93300 | Bridge orthogroup OG0001153 |
| fabZWP_349948860.1 · double-cubane-cluster-containing anaerobic reductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 44.700 / 0.61700 | Profile only |
| accBWP_349948792.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 67.700 / 0.51900 | Bridge orthogroup OG0000034 |
| accCWP_349945430.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 745.000 / 0.99100 | Profile only |
| bcdWP_349947487.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 597.300 / 0.99500 | Profile only |
| bcdWP_349947126.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 584.600 / 1.00000 | Profile only |
| bcdWP_349947212.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 509.100 / 0.98900 | Profile only |
| crtWP_349947485.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 252.700 / 1.00000 | Annotation: specific_product_name |
| etfAWP_349947214.1 · electron transfer flavoprotein subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 454.900 / 0.97900 | Profile only |
| etfAWP_349947130.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 412.200 / 0.98800 | Profile only |
| etfAWP_349947239.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 332.100 / 0.99100 | Profile only |
| etfBWP_349947128.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 319.100 / 1.00000 | Profile only |
| etfBWP_349947238.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 235.600 / 0.99200 | Profile only |
| fabGWP_054738443.1 · 3-oxoacyl-ACP reductase FabG | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 236.500 / 0.96800 | Annotation: specific_product_name |
| fabGWP_349947408.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 211.400 / 0.98400 | Profile only |
| fabGWP_349947218.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.300 / 0.97600 | Profile only |
| fabGWP_349947170.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 139.600 / 0.97600 | Profile only |
| fabGWP_349948199.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 94.500 / 0.78600 | Bridge orthogroup OG0000242 |
| fabHWP_349945443.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 314.200 / 0.98800 | Profile only |
| fabLWP_349945437.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 217.500 / 0.97600 | Profile only |
| fabLWP_054738443.1 · 3-oxoacyl-ACP reductase FabG | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.900 / 0.96000 | Profile only |
| fabLWP_349947218.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.100 / 0.99200 | Profile only |
| fabLWP_349947408.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.500 / 0.97200 | Profile only |
| fabLWP_349947170.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 129.600 / 0.97600 | Profile only |
| hbdWP_349947234.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 396.900 / 0.98600 | Profile only |
| ldhWP_349948823.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 437.600 / 0.98100 | Profile only |
| thlWP_349947232.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 609.000 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.