Assembly
ASM4049921v1
BioProject PRJNA1118504 · BioSample SAMN42009427
GENOME-RESOLVED EVIDENCE
GCA_040499215.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3626017 bp · GC 28.500%
Completeness 97.450% · contamination 5.670%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCABL288_06600 | XCH71025.1 | OG0000061 | CP159337.1:1494536–1495888 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhABL288_00770 | XCH69919.1 | OG0000131 | CP159337.1:165239–166192 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBABL288_06590 | XCH71023.1 | OG0000212 | CP159337.1:1493611–1494102 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdABL288_12750 | XCH69376.1 | OG0000229 | CP159337.1:2829203–2830051 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlABL288_12075 | XCH69268.1 | OG0000234 | CP159337.1:2701011–2702189 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZABL288_06595 | XCH71024.1 | OG0000785 | CP159337.1:1494105–1494524 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEABL288_14345 | XCH69659.1 | OG0001124 | CP159337.1:3145175–3147772 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPABL288_01980 | XCH70141.1 | OG0001228 | CP159337.1:435846–437369 + | L-lactate permease [Clostridium perfringens] |
| crtABL288_12770 | XCH69380.1 | OG0001394 | CP159337.1:2833178–2833960 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtABL288_00730 | XCH69911.1 | OG0001639 | CP159337.1:154593–155369 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.