Assembly
ASM4052918v1
BioProject PRJNA1120372 · BioSample SAMN41688841
GENOME-RESOLVED EVIDENCE
GCA_040529185.1
Sporolactobacillus sp. Y61 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3224419 bp · GC 47.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 7/8 | 0.875 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_129928125.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 388.200 / 0.98900 | Bridge orthogroup OG0001120 |
| accBWP_129930328.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 154.800 / 0.98100 | Annotation: gene_symbol |
| accCWP_353947935.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 687.400 / 0.98900 | Annotation: gene_symbol |
| accDWP_129928124.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 403.900 / 0.98300 | Bridge orthogroup OG0000844 |
| adhEWP_353948489.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1125.200 / 0.99000 | Bridge orthogroup OG0002334 |
| coatWP_129929054.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 224.300 / 0.94900 | Annotation: specific_product_name |
| fabDWP_353947699.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 313.700 / 0.99000 | Annotation: gene_symbol |
| fabFWP_353947588.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 665.400 / 0.99300 | Annotation: gene_symbol |
| fabGWP_129929204.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 278.300 / 0.99600 | Bridge orthogroup OG0000008 |
| fabIWP_353947615.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 381.000 / 0.97300 | Annotation: gene_symbol |
| fabZWP_353948964.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 165.200 / 0.76500 | Bridge orthogroup OG0000074 |
| lctPWP_129930305.1 · lactate permease LctP family transporter | High | Approved candidatestrong profile and bridge orthogroup support | 424.500 / 0.99400 | Bridge orthogroup OG0000731 |
| ldhWP_129928137.1 · malate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 249.300 / 0.98400 | Bridge orthogroup OG0001800 |
| thlWP_353947607.1 · acetyl-CoA C-acyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 442.600 / 0.99500 | Bridge orthogroup OG0000010 |
| fabGWP_353947615.1 · enoyl-ACP reductase FabI | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 82.200 / 0.98000 | Profile only |
| bcdWP_353947608.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 313.900 / 0.98200 | Profile only |
| bcdWP_353948205.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 311.300 / 0.98900 | Profile only |
| crtWP_353948211.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 296.800 / 0.98800 | Annotation: specific_product_name |
| crtWP_129929729.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 163.200 / 0.98800 | Profile only |
| etfAWP_353948207.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 319.200 / 0.97000 | Profile only |
| etfBWP_353948208.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 191.700 / 0.98500 | Profile only |
| fabGWP_353948953.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 208.900 / 0.98800 | Profile only |
| fabGWP_353948237.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 203.900 / 0.99200 | Profile only |
| fabGWP_353949449.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.500 / 0.99200 | Profile only |
| fabGWP_353948345.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 170.700 / 0.98400 | Profile only |
| fabGWP_353947905.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 169.500 / 0.91100 | Bridge orthogroup OG0000242 |
| fabGWP_353947572.1 · enoyl-[acyl-carrier-protein] reductase FabL | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 169.200 / 0.96800 | Profile only |
| fabGWP_353948706.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.200 / 0.98000 | Profile only |
| fabGWP_353948281.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 163.100 / 0.96800 | Profile only |
| fabGWP_129929611.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 157.600 / 0.95600 | Profile only |
| fabGWP_129928549.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 135.200 / 0.97600 | Profile only |
| fabHWP_353947587.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 305.400 / 0.98500 | Profile only |
| fabKWP_353949436.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 306.600 / 0.96200 | Profile only |
| fabLWP_353947572.1 · enoyl-[acyl-carrier-protein] reductase FabL | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 369.400 / 0.97600 | Annotation: gene_symbol |
| fabLWP_129929204.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 237.100 / 0.97600 | Profile only |
| fabLWP_353948706.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.400 / 0.97200 | Profile only |
| fabLWP_353948281.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.400 / 0.97600 | Profile only |
| fabLWP_353948345.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.500 / 0.97200 | Profile only |
| fabLWP_353948237.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.100 / 0.98000 | Profile only |
| fabLWP_353949449.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 170.100 / 0.96800 | Profile only |
| fabLWP_129928549.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.900 / 0.97600 | Profile only |
| fabLWP_353948953.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 159.300 / 0.98800 | Profile only |
| fabLWP_129929611.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.200 / 0.95200 | Profile only |
| fabLWP_353947905.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 127.400 / 0.79000 | Profile only |
| hbdWP_353948212.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 376.700 / 1.00000 | Profile only |
| ldhWP_353948458.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 289.300 / 0.98700 | Profile only |
| ldhWP_353948371.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 244.400 / 0.96800 | Profile only |
| thlWP_353948210.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 577.000 / 0.99700 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.