Assembly
SCACP
BioProject PRJNA1082235 · BioSample SAMN40201554
GENOME-RESOLVED EVIDENCE
GCA_041428575.1
Sporomusa carbonis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4144804 bp · GC 46.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_425058836.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 144.500 / 0.98800 | Annotation: gene_symbol |
| accCWP_425058833.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 706.700 / 0.98900 | Annotation: gene_symbol |
| accCWP_425058449.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 597.100 / 0.99300 | Annotation: gene_symbol |
| bcdWP_425059472.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 598.400 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_425058914.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 597.200 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_425058717.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 582.400 / 0.99200 | Annotation: bcd_etfAB_neighborhood |
| coatWP_425058322.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 266.800 / 0.99100 | Bridge orthogroup OG0004934 |
| coatWP_425058323.1 · acetate CoA-transferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 131.700 / 0.71000 | Bridge orthogroup OG0000263 |
| etfAWP_425059470.1 · FAD-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 459.000 / 0.98500 | Bridge orthogroup OG0001385 |
| etfAWP_425058912.1 · FAD-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 450.700 / 0.98500 | Bridge orthogroup OG0001385 |
| etfAWP_425058715.1 · FAD-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 435.100 / 0.99100 | Bridge orthogroup OG0001385 |
| etfBWP_425058913.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 397.800 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_425059471.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 396.500 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_425058716.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 365.600 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_425060806.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 393.400 / 0.99000 | Annotation: gene_symbol |
| fabFWP_425060810.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 663.300 / 0.99300 | Annotation: gene_symbol |
| fabGWP_425060807.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 278.100 / 0.99600 | Bridge orthogroup OG0000008 |
| fabHWP_425060461.1 · 3-oxoacyl-ACP synthase III family protein | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 247.700 / 0.99400 | Annotation: specific_product_name |
| fabKWP_425061355.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 447.100 / 0.92000 | Annotation: gene_symbol |
| fabZWP_425058594.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 164.000 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_425059867.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 316.800 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_425058255.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 601.100 / 0.98200 | Bridge orthogroup OG0000731 |
| rnfAWP_425060613.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 270.900 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_425060614.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 340.000 / 0.92900 | Bridge orthogroup OG0001404 |
| rnfCWP_425060609.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 424.200 / 0.75300 | Bridge orthogroup OG0001114 |
| rnfDWP_425060610.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 495.200 / 0.95600 | Bridge orthogroup OG0001182 |
| rnfEWP_425060612.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 286.000 / 0.97600 | Bridge orthogroup OG0001153 |
| rnfGWP_425060611.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 202.400 / 0.91800 | Bridge orthogroup OG0001292 |
| accCWP_425060308.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 526.200 / 0.98400 | Profile only |
| accCWP_425057748.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 517.400 / 0.98400 | Profile only |
| bcdWP_425061251.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 490.900 / 0.99700 | Profile only |
| bcdWP_425059945.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 425.300 / 0.99200 | Profile only |
| bcdWP_425059946.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 378.400 / 0.99700 | Profile only |
| crtWP_425059883.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 381.400 / 0.99600 | Annotation: specific_product_name |
| crtWP_425058906.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 375.200 / 0.99600 | Annotation: specific_product_name |
| etfAWP_425059948.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 223.200 / 0.92000 | Profile only |
| fabGWP_425059476.1 · beta-ketoacyl-ACP reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 249.600 / 0.98400 | Bridge orthogroup OG0000008 |
| fabHWP_425057807.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 355.700 / 0.99400 | Profile only |
| fabHWP_425060805.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 342.200 / 0.99100 | Profile only |
| fabKWP_425060809.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 254.000 / 0.93300 | Profile only |
| fabLWP_425059476.1 · beta-ketoacyl-ACP reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.000 / 0.98800 | Profile only |
| hbdWP_425061286.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 419.600 / 1.00000 | Profile only |
| hbdWP_425058907.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 410.600 / 1.00000 | Profile only |
| hbdWP_425059882.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 398.300 / 1.00000 | Profile only |
| rnfCWP_425060128.1 · SLBB domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 514.000 / 0.99300 | Profile only |
| thlWP_425059473.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 626.600 / 0.99700 | Profile only |
| thlWP_425058319.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 623.600 / 0.99700 | Profile only |
| thlWP_425059881.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 617.500 / 0.99700 | Profile only |
| thlWP_425058908.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 617.300 / 0.99700 | Profile only |
| fabLWP_425060807.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 229.700 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.