Assembly
SMWOGL2
BioProject PRJNA1081642 · BioSample SAMN40183415
GENOME-RESOLVED EVIDENCE
GCA_041428715.1
Sporomusa malonica · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5312210 bp · GC 44.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_084574871.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 142.300 / 0.97500 | Annotation: gene_symbol |
| accCWP_084574944.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 691.800 / 0.99100 | Annotation: gene_symbol |
| bcdWP_084573552.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 593.100 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_084575645.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 590.900 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| coatWP_084573549.1 · CoA transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 279.600 / 0.95900 | Bridge orthogroup OG0004934 |
| coatWP_084574586.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 271.000 / 1.00000 | Bridge orthogroup OG0004934 |
| coatWP_084575596.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 269.300 / 0.99500 | Bridge orthogroup OG0004934 |
| coatWP_084577455.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 244.000 / 0.95400 | Annotation: specific_product_name |
| coatWP_084575597.1 · acetate CoA-transferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 135.900 / 0.71000 | Bridge orthogroup OG0000263 |
| coatWP_084574587.1 · CoA transferase subunit A | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 127.900 / 0.70500 | Bridge orthogroup OG0000263 |
| coatWP_084573548.1 · acetate CoA-transferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 119.200 / 0.75600 | Bridge orthogroup OG0000263 |
| coatWP_084577454.1 · CoA transferase subunit A | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 98.200 / 0.70500 | Bridge orthogroup OG0000263 |
| etfAWP_084575801.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 452.400 / 0.98800 | Bridge orthogroup OG0001385 |
| etfAWP_084575643.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 452.300 / 0.97900 | Bridge orthogroup OG0001385 |
| etfAWP_084573554.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 450.400 / 0.99100 | Bridge orthogroup OG0001385 |
| etfAWP_084575809.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 445.100 / 0.97000 | Bridge orthogroup OG0002903 |
| etfAWP_084578567.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 433.800 / 0.98200 | Bridge orthogroup OG0001385 |
| etfBWP_084573553.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 387.500 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_084575644.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 387.300 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_084578568.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 381.400 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_084575802.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 376.200 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_084575808.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 365.700 / 1.00000 | Bridge orthogroup OG0002348 |
| fabDWP_084575470.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 395.200 / 0.98700 | Annotation: gene_symbol |
| fabFWP_084575466.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 660.200 / 0.99300 | Annotation: gene_symbol |
| fabFWP_084574719.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 606.200 / 0.99000 | Annotation: gene_symbol |
| fabGWP_084575469.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 275.100 / 0.99600 | Bridge orthogroup OG0000008 |
| fabGWP_084573556.1 · 3-oxoacyl-ACP reductase FabG | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 242.700 / 0.98400 | Bridge orthogroup OG0000008 |
| fabHWP_084575547.1 · 3-oxoacyl-ACP synthase III family protein | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 215.800 / 0.99700 | Annotation: specific_product_name |
| fabZWP_084574355.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 157.400 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_084574591.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 246.500 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_084575924.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 432.400 / 0.99000 | Bridge orthogroup OG0000731 |
| rnfAWP_084576181.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 259.000 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_084576180.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 341.800 / 0.92500 | Bridge orthogroup OG0001404 |
| rnfCWP_084576185.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 422.400 / 0.75300 | Bridge orthogroup OG0001114 |
| rnfDWP_084576184.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 492.900 / 0.95600 | Bridge orthogroup OG0001182 |
| rnfEWP_084576182.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 267.700 / 0.97100 | Bridge orthogroup OG0001153 |
| rnfGWP_084576183.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 200.900 / 0.90700 | Bridge orthogroup OG0001292 |
| thlWP_084577630.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 414.900 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_245824099.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 527.800 / 0.98400 | Profile only |
| bcdWP_084576917.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 493.200 / 0.99700 | Profile only |
| bcdWP_084574606.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 418.500 / 0.99200 | Profile only |
| bcdWP_084574605.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 379.400 / 0.99700 | Profile only |
| etfAWP_084574603.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 222.000 / 0.92300 | Profile only |
| fabGWP_084575650.1 · beta-ketoacyl-ACP reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 246.900 / 0.98400 | Bridge orthogroup OG0000008 |
| fabGWP_084577457.1 · beta-ketoacyl-ACP reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 245.500 / 0.98400 | Bridge orthogroup OG0000008 |
| fabGWP_084578565.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.700 / 0.98800 | Profile only |
| fabGWP_084574584.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.500 / 0.97600 | Profile only |
| fabGWP_176215645.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.000 / 0.98800 | Profile only |
| fabGWP_084577936.1 · 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.900 / 0.98800 | Profile only |
| fabGWP_084576505.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.700 / 0.98800 | Profile only |
| fabGWP_084578437.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 103.600 / 0.75000 | Profile only |
| fabGWP_084574328.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 102.900 / 0.90300 | Bridge orthogroup OG0000242 |
| fabHWP_084575472.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 346.200 / 0.99400 | Profile only |
| fabHWP_084576643.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 338.600 / 0.99100 | Profile only |
| fabKWP_371361024.1 · DUF561 domain-containing protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 438.200 / 0.92400 | Profile only |
| fabKWP_084578331.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 407.400 / 0.98700 | Profile only |
| fabKWP_084575467.1 · nitronate monooxygenase family protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 266.800 / 0.93300 | Profile only |
| fabLWP_084575650.1 · beta-ketoacyl-ACP reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.900 / 0.98800 | Profile only |
| fabLWP_084573556.1 · 3-oxoacyl-ACP reductase FabG | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.700 / 0.98800 | Profile only |
| fabLWP_084577936.1 · 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.700 / 0.97200 | Profile only |
| fabLWP_084577457.1 · beta-ketoacyl-ACP reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.900 / 0.98800 | Profile only |
| fabLWP_084574584.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.100 / 0.97600 | Profile only |
| fabLWP_084578565.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.400 / 0.99200 | Profile only |
| fabLWP_084576505.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.100 / 0.97600 | Profile only |
| fabLWP_176215645.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.700 / 0.98000 | Profile only |
| hbdWP_084575641.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 400.000 / 0.99600 | Profile only |
| hbdWP_084577633.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 273.500 / 0.99300 | Profile only |
| rnfCWP_084575568.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 585.100 / 0.98900 | Profile only |
| rnfCWP_084573794.1 · SLBB domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 508.200 / 0.98400 | Profile only |
| rnfCWP_371360891.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 464.800 / 0.99300 | Profile only |
| rnfCWP_371360858.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 461.800 / 0.99300 | Profile only |
| thlWP_084575646.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 618.500 / 0.99700 | Profile only |
| thlWP_084574589.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 611.700 / 0.99700 | Profile only |
| thlWP_084575594.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 609.300 / 0.99700 | Profile only |
| thlWP_084573551.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 606.700 / 0.99700 | Profile only |
| thlWP_084577456.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 581.000 / 0.99700 | Profile only |
| fabLWP_084575469.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 222.700 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.