Assembly
ASM4193055v1
BioProject PRJNA1156946 · BioSample SAMN43504305
GENOME-RESOLVED EVIDENCE
GCA_041930555.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3344110 bp · GC 28.500%
Completeness 96.850% · contamination 3.800%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACEVFY_06575 | XGV32087.1 | OG0000061 | CP169383.1:1502278–1503630 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACEVFY_00670 | XGV30971.1 | OG0000131 | CP169383.1:151506–152459 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACEVFY_06565 | XGV32085.1 | OG0000212 | CP169383.1:1501353–1501844 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACEVFY_12625 | XGV30495.1 | OG0000229 | CP169383.1:2826816–2827664 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACEVFY_12020 | XGV30401.1 | OG0000234 | CP169383.1:2709425–2710603 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACEVFY_06570 | XGV32086.1 | OG0000785 | CP169383.1:1501847–1502266 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACEVFY_13925 | XGV30725.1 | OG0001124 | CP169383.1:3084153–3086750 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACEVFY_01780 | XGV31177.1 | OG0001228 | CP169383.1:408132–409655 + | L-lactate permease [Clostridium perfringens] |
| crtACEVFY_12645 | XGV30499.1 | OG0001394 | CP169383.1:2830791–2831573 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACEVFY_00630 | XGV30963.1 | OG0001639 | CP169383.1:140855–141631 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.