Assembly
ASM4285157v1
BioProject PRJDB17661 · BioSample SAMD00759022
GENOME-RESOLVED EVIDENCE
GCA_042851575.1
Clostridium baratii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3173694 bp · GC 28.500%
Completeness 98.760% · contamination 0.950%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCI3900191A7_13870 | BFK81242.1 | OG0000061 | AP031436.1:1471694–1473046 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium baratii] |
| ldhI3900191A7_08860 | BFK80741.1 | OG0000131 | AP031436.1:959018–959968 + | L-lactate dehydrogenase [Clostridium baratii] |
| ldhI3900191A7_28410 | BFK82696.1 | OG0000131 | AP031436.1:2963504–2964454 - | L-lactate dehydrogenase [Clostridium baratii] |
| accBI3900191A7_13850 | BFK81240.1 | OG0000212 | AP031436.1:1470754–1471260 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium baratii] |
| hbdI3900191A7_03570 | BFK80212.1 | OG0000229 | AP031436.1:396112–396960 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium baratii] |
| thlI3900191A7_04660 | BFK80321.1 | OG0000234 | AP031436.1:522211–523389 + | acetyl-CoA C-acetyltransferase [Clostridium baratii] |
| fabZI3900191A7_13860 | BFK81241.1 | OG0000785 | AP031436.1:1471262–1471684 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium baratii] |
| lctPI3900191A7_06240 | BFK80479.1 | OG0001228 | AP031436.1:689424–690950 + | L-lactate permease [Clostridium baratii] |
| crtI3900191A7_03530 | BFK80208.1 | OG0001394 | AP031436.1:392259–393041 + | short-chain-enoyl-CoA hydratase [Clostridium baratii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.