Assembly
ASM4285437v1
BioProject PRJDB17661 · BioSample SAMD00758966
GENOME-RESOLVED EVIDENCE
GCA_042854375.1
Coprococcus phoceensis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3502310 bp · GC 39.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBBFK12787.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 155.900 / 0.98100 | Annotation: gene_symbol |
| accDBFK12784.1 · hypothetical protein | High | Approved candidatestrong profile and bridge orthogroup support | 435.200 / 0.98300 | Bridge orthogroup OG0000844 |
| adhEBFK10765.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1532.600 / 0.99400 | Bridge orthogroup OG0002334 |
| fabDBFK12790.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 313.300 / 0.96800 | Annotation: gene_symbol |
| fabFBFK12788.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 578.700 / 0.99300 | Annotation: gene_symbol |
| fabGBFK12789.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 273.200 / 0.99200 | Bridge orthogroup OG0000008 |
| fabKBFK12791.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 518.100 / 0.98400 | Annotation: gene_symbol |
| fabZBFK12786.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 174.000 / 0.76000 | Bridge orthogroup OG0000074 |
| rnfABFK11703.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 272.400 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBBFK11702.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 309.200 / 0.92100 | Bridge orthogroup OG0001404 |
| rnfCBFK11707.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 367.400 / 0.73200 | Bridge orthogroup OG0001114 |
| rnfDBFK11706.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 332.800 / 0.93800 | Bridge orthogroup OG0001182 |
| rnfEBFK11704.1 · electron transport complex subunit E | High | Approved candidatestrong profile and bridge orthogroup support | 291.600 / 0.96600 | Bridge orthogroup OG0001153 |
| rnfGBFK11705.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 148.800 / 0.92300 | Bridge orthogroup OG0001292 |
| accCBFK12785.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 724.700 / 0.99300 | Profile only |
| fabGBFK12619.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 226.600 / 0.97600 | Profile only |
| fabGBFK11673.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 106.200 / 0.86700 | Bridge orthogroup OG0000242 |
| fabHBFK12793.1 · ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 306.200 / 0.98500 | Profile only |
| fabLBFK12789.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 219.800 / 0.97200 | Profile only |
| fabLBFK12619.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.000 / 0.96800 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.