Assembly
ASM4352071v1
BioProject PRJNA287738 · BioSample SAMN44270553
GENOME-RESOLVED EVIDENCE
GCA_043520715.1
Megasphaera hexanoica · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2882434 bp · GC 49.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| etfBWP_059077322.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 341.100 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_059076791.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 346.500 / 0.97100 | Annotation: gene_symbol |
| fabFWP_059076795.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 600.200 / 0.99300 | Annotation: gene_symbol |
| fabGWP_059076792.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 265.300 / 0.98800 | Bridge orthogroup OG0000008 |
| fabZWP_113855460.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 139.000 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_394522366.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 301.500 / 0.98600 | Bridge orthogroup OG0000153 |
| lctPWP_113856469.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 567.700 / 0.98600 | Bridge orthogroup OG0000731 |
| lctPWP_113856294.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 512.200 / 0.98800 | Bridge orthogroup OG0000731 |
| rnfAWP_059076695.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 280.700 / 0.99000 | Bridge orthogroup OG0001169 |
| rnfBWP_059076696.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 309.500 / 0.97500 | Bridge orthogroup OG0001404 |
| rnfCWP_059076691.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 397.400 / 0.77300 | Bridge orthogroup OG0001114 |
| rnfDWP_113855419.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 483.200 / 0.96200 | Bridge orthogroup OG0001182 |
| rnfEWP_059076694.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 303.700 / 0.98100 | Bridge orthogroup OG0001153 |
| rnfGWP_059076693.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 191.700 / 0.91800 | Bridge orthogroup OG0001292 |
| thlWP_059075873.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 539.900 / 0.99500 | Bridge orthogroup OG0005114 |
| accCWP_394522511.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 515.000 / 0.98700 | Profile only |
| bcdWP_059076372.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 581.100 / 0.99700 | Profile only |
| bcdWP_059077323.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 555.500 / 0.99700 | Profile only |
| bcdWP_059076926.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 460.900 / 0.99500 | Profile only |
| bcdWP_059077342.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 408.100 / 0.99700 | Profile only |
| crtWP_059077295.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 354.300 / 0.99600 | Annotation: specific_product_name |
| etfAWP_075582160.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 453.000 / 0.99100 | Profile only |
| etfAWP_075582278.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 313.900 / 0.98500 | Profile only |
| etfBWP_113856004.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 259.000 / 1.00000 | Profile only |
| fabGWP_059077071.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 235.300 / 0.99600 | Profile only |
| fabGWP_075581779.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 226.700 / 0.98800 | Profile only |
| fabGWP_059076365.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.100 / 0.98400 | Bridge orthogroup OG0000008 |
| fabGWP_075581507.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.300 / 0.99200 | Profile only |
| fabGWP_059076392.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.200 / 0.98800 | Profile only |
| fabGWP_113855996.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.800 / 0.98000 | Profile only |
| fabGWP_113855339.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 157.500 / 0.98800 | Profile only |
| fabGWP_059077119.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 146.800 / 0.99200 | Profile only |
| fabGWP_113855872.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 84.800 / 0.79000 | Bridge orthogroup OG0000242 |
| fabHWP_059076790.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 311.100 / 0.98200 | Profile only |
| fabKWP_172793345.1 · nitronate monooxygenase family protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 215.100 / 0.93900 | Profile only |
| fabLWP_059076792.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 231.000 / 0.97200 | Profile only |
| fabLWP_075581779.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 212.500 / 0.97600 | Profile only |
| fabLWP_059077071.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.300 / 0.99200 | Profile only |
| fabLWP_059076392.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.400 / 0.98000 | Profile only |
| fabLWP_075581507.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.500 / 0.98400 | Profile only |
| fabLWP_059076365.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.000 / 0.98000 | Profile only |
| fabLWP_113855339.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 151.600 / 0.98400 | Profile only |
| fabLWP_113855996.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 150.000 / 0.97600 | Profile only |
| fabLWP_059077119.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 115.800 / 0.97200 | Profile only |
| hbdWP_059077296.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 398.600 / 0.99300 | Profile only |
| ldhWP_059076901.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 288.400 / 0.99400 | Profile only |
| rnfCWP_113855450.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 543.100 / 0.98900 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.