Assembly
ASM4363358v1
BioProject PRJNA1059750 · BioSample SAMN39213499
GENOME-RESOLVED EVIDENCE
GCA_043633585.1
Lacrimispora sinapis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3753647 bp · GC 44.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 4/6 | 0.667 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_394524147.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 157.900 / 0.98800 | Annotation: gene_symbol |
| accDWP_394524151.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 444.100 / 0.99300 | Bridge orthogroup OG0000844 |
| adhEWP_394524029.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1511.600 / 0.99400 | Bridge orthogroup OG0002334 |
| coatWP_394522921.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 257.300 / 1.00000 | Annotation: specific_product_name |
| coatWP_394522922.1 · CoA transferase subunit A | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 104.800 / 0.71000 | Bridge orthogroup OG0000263 |
| crtWP_394522588.1 · enoyl-CoA hydratase/isomerase family protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 163.500 / 0.88800 | Bridge orthogroup OG0015082 |
| crtWP_394522586.1 · enoyl-CoA hydratase/isomerase family protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 144.600 / 0.76400 | Bridge orthogroup OG0015083 |
| etfAWP_394522620.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 449.000 / 0.97900 | Bridge orthogroup OG0002903 |
| etfBWP_394522621.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 355.200 / 0.99600 | Bridge orthogroup OG0002348 |
| fabDWP_394524142.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 321.300 / 0.96500 | Annotation: gene_symbol |
| fabFWP_394524145.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 574.800 / 0.99300 | Annotation: gene_symbol |
| fabGWP_394524144.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 269.600 / 0.99600 | Bridge orthogroup OG0000008 |
| fabHWP_394522585.1 · 3-oxoacyl-ACP synthase III family protein | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 375.800 / 0.98800 | Annotation: specific_product_name |
| fabHWP_394522596.1 · 3-oxoacyl-ACP synthase III family protein | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 218.700 / 0.97600 | Annotation: specific_product_name |
| fabKWP_394524138.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 508.200 / 0.97500 | Annotation: gene_symbol |
| fabZWP_394524149.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 197.700 / 0.76000 | Bridge orthogroup OG0000074 |
| rnfAWP_394526635.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 270.700 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfCWP_394526622.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 370.900 / 0.75500 | Bridge orthogroup OG0001114 |
| rnfDWP_394526626.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 320.700 / 0.94100 | Bridge orthogroup OG0001182 |
| rnfEWP_394526633.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 269.200 / 0.92800 | Bridge orthogroup OG0001153 |
| thlWP_394522924.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 533.100 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_394524150.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 739.900 / 0.99100 | Profile only |
| fabFWP_394522582.1 · beta-ketoacyl-[acyl-carrier-protein] synthase family protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 417.800 / 0.99800 | Profile only |
| fabGWP_394526078.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 236.900 / 0.96400 | Profile only |
| fabGWP_394523232.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 234.100 / 0.97600 | Profile only |
| fabGWP_394522730.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 213.200 / 0.98400 | Profile only |
| fabGWP_394522323.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.700 / 0.98800 | Profile only |
| fabGWP_394523840.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 204.700 / 0.98800 | Profile only |
| fabGWP_394527084.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.300 / 0.97600 | Profile only |
| fabGWP_394523842.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.000 / 0.98400 | Profile only |
| fabGWP_394522456.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.500 / 0.98800 | Profile only |
| fabGWP_394525541.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 146.500 / 0.97600 | Profile only |
| fabGWP_394522136.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 100.800 / 0.77800 | Bridge orthogroup OG0000242 |
| fabHWP_394524134.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 326.500 / 0.99100 | Profile only |
| fabKWP_394527429.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 329.400 / 0.98700 | Profile only |
| fabLWP_394524144.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 222.100 / 0.97600 | Profile only |
| fabLWP_394526078.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 219.900 / 0.97600 | Profile only |
| fabLWP_394523232.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.800 / 0.98000 | Profile only |
| fabLWP_394522323.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.800 / 0.99200 | Profile only |
| fabLWP_394523842.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.800 / 0.98000 | Profile only |
| fabLWP_394523840.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.000 / 0.99200 | Profile only |
| fabLWP_394522456.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.400 / 0.98400 | Profile only |
| fabLWP_394522730.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.800 / 0.97600 | Profile only |
| fabLWP_394527084.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.500 / 0.96000 | Profile only |
| fabLWP_394525541.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 126.700 / 0.97600 | Profile only |
| ldhWP_394525748.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 452.200 / 0.99100 | Profile only |
| ldhWP_394525858.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 429.800 / 0.98100 | Profile only |
| ldhWP_394523959.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 344.100 / 0.97800 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.