Assembly
ASM4433639v1
BioProject PRJNA1174072 · BioSample SAMN44327364
GENOME-RESOLVED EVIDENCE
GCA_044336395.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4593329 bp · GC 44.000%
Completeness 87.780% · contamination 3.210%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACG3M1_16405 | XJS54016.1 | OG0000061 | CP172347.1:3289070–3290437 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. C45] |
| ldhACG3M1_17235 | XJS54175.1 | OG0000131 | CP172347.1:3453862–3454812 - | L-lactate dehydrogenase [Clostridium sp. C45] |
| ldhACG3M1_17240 | XJS54176.1 | OG0000131 | CP172347.1:3454917–3455867 - | L-lactate dehydrogenase [Clostridium sp. C45] |
| accBACG3M1_16410 | XJS54017.1 | OG0000212 | CP172347.1:3290434–3290898 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. C45] |
| thlACG3M1_13675 | XJS53495.1 | OG0000234 | CP172347.1:2756207–2757415 + | acetyl-CoA C-acetyltransferase [Clostridium sp. C45] |
| thlACG3M1_13680 | XJS53496.1 | OG0000234 | CP172347.1:2757612–2758817 + | acetyl-CoA C-acetyltransferase [Clostridium sp. C45] |
| fabZACG3M1_16360 | XJS54008.1 | OG0000785 | CP172347.1:3280880–3281314 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. C45] |
| rnfAACG3M1_09840 | XJS57103.1 | OG0001328 | CP172347.1:2010392–2010973 + | electron transport complex protein RnfA [Clostridium sp. C45] |
| accCACG3M1_13585 | XJS53478.1 | OG0009678 | CP172347.1:2738932–2740110 + | acetyl-CoA carboxylase biotin carboxylase subunit family protein [Clostridium sp. C45] |
| crtACG3M1_13650 | XJS53490.1 | OG0011992 | CP172347.1:2751071–2751850 - | short-chain-enoyl-CoA hydratase [Clostridium sp. C45] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.