Assembly
ASM4498729v1
BioProject PRJNA1177625 · BioSample SAMN44444936
GENOME-RESOLVED EVIDENCE
GCA_044987295.1
Lacrimispora sp. HJ-01 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5411172 bp · GC 43.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_395549283.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 155.500 / 0.98800 | Annotation: gene_symbol |
| accDWP_395549285.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 436.300 / 0.98600 | Bridge orthogroup OG0000844 |
| adhEWP_154526306.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1530.000 / 0.99400 | Bridge orthogroup OG0002334 |
| etfAWP_395546539.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 443.500 / 0.98200 | Bridge orthogroup OG0002903 |
| etfBWP_038277392.1 · electron transfer flavoprotein subunit beta | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 368.100 / 1.00000 | Annotation: gene_symbol |
| etfBWP_395546538.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 359.900 / 1.00000 | Bridge orthogroup OG0002348 |
| fabDWP_038282204.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 321.700 / 0.97100 | Annotation: gene_symbol |
| fabFWP_395549282.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 574.200 / 0.99300 | Annotation: gene_symbol |
| fabGWP_395549281.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 262.200 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_395549280.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 500.200 / 0.97100 | Annotation: gene_symbol |
| fabZWP_174715190.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 196.800 / 0.76000 | Bridge orthogroup OG0000074 |
| rnfAWP_025232597.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 268.000 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_395548882.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 336.100 / 0.92500 | Bridge orthogroup OG0001404 |
| rnfCWP_038282533.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 389.900 / 0.74600 | Bridge orthogroup OG0001114 |
| rnfDWP_038282531.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 322.000 / 0.93800 | Bridge orthogroup OG0001182 |
| rnfEWP_395548881.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 274.600 / 0.92300 | Bridge orthogroup OG0001153 |
| fabGWP_395547084.1 · SDR family NAD(P)-dependent oxidoreductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 82.500 / 0.78600 | Profile only |
| accCWP_395549284.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 735.300 / 0.99100 | Profile only |
| bcdWP_395546435.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 586.400 / 1.00000 | Profile only |
| bcdWP_038277391.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 512.000 / 0.98900 | Profile only |
| etfAWP_154523530.1 · electron transfer flavoprotein subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 456.100 / 0.97900 | Profile only |
| etfAWP_395546437.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 409.600 / 0.99100 | Profile only |
| etfBWP_395546436.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 311.000 / 1.00000 | Profile only |
| fabGWP_038277643.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 235.100 / 0.97200 | Profile only |
| fabGWP_025234618.1 · SDR family oxidoreductase UcpA | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 221.700 / 0.98400 | Profile only |
| fabGWP_089990662.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.900 / 0.98400 | Profile only |
| fabGWP_395547106.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.300 / 0.98800 | Profile only |
| fabGWP_154521188.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.200 / 0.97600 | Profile only |
| fabGWP_038283440.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.400 / 0.96000 | Profile only |
| fabGWP_395547355.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.800 / 0.97600 | Profile only |
| fabGWP_154521092.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.900 / 0.97200 | Profile only |
| fabGWP_154523383.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 137.100 / 0.97600 | Profile only |
| fabGWP_154520603.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 103.900 / 0.77400 | Bridge orthogroup OG0000242 |
| fabHWP_395549279.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 312.100 / 0.98800 | Profile only |
| fabLWP_395549281.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 214.100 / 0.97600 | Profile only |
| fabLWP_038277643.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 201.700 / 0.96400 | Profile only |
| fabLWP_025234618.1 · SDR family oxidoreductase UcpA | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.400 / 0.99200 | Profile only |
| fabLWP_154521188.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.800 / 0.99200 | Profile only |
| fabLWP_395547106.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.400 / 0.99200 | Profile only |
| fabLWP_089990662.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 180.600 / 0.97200 | Profile only |
| fabLWP_038283440.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.600 / 0.95600 | Profile only |
| fabLWP_395547355.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.700 / 0.98000 | Profile only |
| fabLWP_154521092.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.700 / 0.96400 | Profile only |
| fabLWP_154523383.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 128.300 / 0.97600 | Profile only |
| ldhWP_395548387.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 431.400 / 0.98100 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.