Assembly
ASM4500289v1
BioProject PRJNA1182259 · BioSample SAMN44590036
GENOME-RESOLVED EVIDENCE
GCA_045002895.1
Eubacterium ramulus · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3378009 bp · GC 43.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_022036468.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 152.700 / 0.99400 | Annotation: gene_symbol |
| accBWP_022035370.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 149.300 / 0.98800 | Annotation: gene_symbol |
| accCWP_022036467.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 673.700 / 0.98900 | Annotation: gene_symbol |
| accDWP_404856552.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 415.200 / 0.87400 | Bridge orthogroup OG0000844 |
| coatWP_021738578.1 · 3-oxoacid CoA-transferase subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 253.000 / 0.98200 | Bridge orthogroup OG0004934 |
| coatWP_055290908.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 221.000 / 0.97700 | Annotation: specific_product_name |
| coatWP_021738579.1 · CoA transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 88.900 / 0.69600 | Bridge orthogroup OG0000263 |
| etfAWP_055290640.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 411.000 / 0.97900 | Bridge orthogroup OG0002903 |
| etfBWP_055290639.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 322.700 / 1.00000 | Bridge orthogroup OG0002348 |
| fabDWP_055289173.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 314.700 / 0.97500 | Annotation: gene_symbol |
| fabFWP_022035369.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 586.400 / 0.99300 | Annotation: gene_symbol |
| fabGWP_055289170.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 282.400 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_021740195.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 511.400 / 0.97100 | Annotation: gene_symbol |
| fabZWP_021740190.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 173.400 / 0.76500 | Bridge orthogroup OG0000074 |
| hbdWP_021737918.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 247.200 / 0.97200 | Bridge orthogroup OG0000153 |
| rnfAWP_021739971.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 264.300 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_021739970.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 311.300 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_022036740.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 384.500 / 0.74100 | Bridge orthogroup OG0001114 |
| rnfDWP_022036739.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 315.200 / 0.93800 | Bridge orthogroup OG0001182 |
| rnfEWP_021739972.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 270.700 / 0.96200 | Bridge orthogroup OG0001153 |
| fabZWP_055289299.1 · acyl-CoA dehydratase activase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 78.700 / 0.93400 | Profile only |
| accCWP_021740189.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 728.500 / 0.99100 | Profile only |
| accCWP_055288909.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 506.400 / 0.98900 | Profile only |
| bcdWP_161128790.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 585.300 / 1.00000 | Profile only |
| bcdWP_055290758.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 583.400 / 1.00000 | Profile only |
| bcdWP_055290651.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 447.800 / 0.99700 | Profile only |
| crtWP_022036059.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 358.000 / 0.98500 | Annotation: specific_product_name |
| etfAWP_240122430.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 423.300 / 0.98200 | Profile only |
| etfAWP_022036463.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 422.600 / 0.98200 | Profile only |
| etfAWP_055290649.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 333.100 / 0.99400 | Profile only |
| etfBWP_021739573.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 306.400 / 0.99600 | Profile only |
| etfBWP_055290650.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 219.600 / 0.99600 | Profile only |
| fabGWP_021739311.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 218.800 / 0.96800 | Profile only |
| fabGWP_022035781.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 208.600 / 0.99600 | Profile only |
| fabGWP_021737919.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 145.000 / 0.99200 | Profile only |
| fabGWP_021740004.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 133.300 / 0.98000 | Profile only |
| fabGWP_055289165.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 91.600 / 0.77400 | Bridge orthogroup OG0000242 |
| fabHWP_055291160.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 312.600 / 0.99100 | Profile only |
| fabLWP_055289170.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 238.400 / 0.98800 | Profile only |
| fabLWP_022035781.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.200 / 0.98800 | Profile only |
| fabLWP_021739311.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 166.800 / 0.96000 | Profile only |
| fabLWP_021737919.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.800 / 0.98000 | Profile only |
| fabLWP_021740004.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 117.000 / 0.98400 | Profile only |
| hbdWP_021740763.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 395.700 / 0.98900 | Profile only |
| ldhWP_055290248.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 408.700 / 0.98400 | Profile only |
| ldhWP_082432641.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 407.400 / 0.98700 | Profile only |
| thlWP_021740764.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 585.600 / 0.99500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.