Assembly
ASM4525752v1
BioProject PRJNA1118674 · BioSample SAMN41611680
GENOME-RESOLVED EVIDENCE
GCA_045257525.1
Clostridium ljungdahlii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4628661 bp · GC 31.000%
Completeness 75.480% · contamination 2.480%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| lctP | L-lactate permease | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accBACI7YY_11005 | XKS08329.1 | OG0000212 | CP174102.1:2235621–2235839 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium ljungdahlii] |
| accBACI7YY_22970 | XKS06469.1 | OG0000212 | CP174102.1:4553294–4553806 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium ljungdahlii] |
| lctPACI7YY_11600 | XKS04610.1 | OG0001228 | CP174102.1:2360784–2362310 - | L-lactate permease [Clostridium ljungdahlii] |
| rnfAACI7YY_06035 | XKS07501.1 | OG0001328 | CP174102.1:1239129–1239710 + | electron transport complex protein RnfA [Clostridium ljungdahlii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.