Assembly
ASM4525754v1
BioProject PRJNA1118674 · BioSample SAMN41611682
GENOME-RESOLVED EVIDENCE
GCA_045257545.1
Clostridium ljungdahlii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4627396 bp · GC 31.000%
Completeness 92.370% · contamination 2.480%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACI7YW_21935 | XKS14392.1 | OG0000061 | CP174104.1:4550163–4551506 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium ljungdahlii] |
| accBACI7YW_10655 | XKS16380.1 | OG0000212 | CP174104.1:2233953–2234171 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium ljungdahlii] |
| accBACI7YW_21945 | XKS14393.1 | OG0000212 | CP174104.1:4552008–4552520 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium ljungdahlii] |
| adhEACI7YW_08390 | XKS15981.1 | OG0001124 | CP174104.1:1790781–1793393 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium ljungdahlii] |
| adhEACI7YW_08395 | XKS15982.1 | OG0001124 | CP174104.1:1793545–1796178 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium ljungdahlii] |
| lctPACI7YW_11220 | XKS12453.1 | OG0001228 | CP174104.1:2359158–2360684 - | L-lactate permease [Clostridium ljungdahlii] |
| rnfAACI7YW_05770 | XKS15491.1 | OG0001328 | CP174104.1:1239428–1240009 + | electron transport complex protein RnfA [Clostridium ljungdahlii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.