Assembly
ASM4525757v1
BioProject PRJNA1118674 · BioSample SAMN41611683
GENOME-RESOLVED EVIDENCE
GCA_045257575.1
Clostridium ljungdahlii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4626110 bp · GC 31.000%
Completeness 90.090% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACI7YV_21660 | XKS18565.1 | OG0000061 | CP174105.1:4548876–4550219 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium ljungdahlii] |
| accBACI7YV_10395 | XKS20515.1 | OG0000212 | CP174105.1:2232499–2232717 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium ljungdahlii] |
| accBACI7YV_21670 | XKS18567.1 | OG0000212 | CP174105.1:4550722–4551234 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium ljungdahlii] |
| fabZACI7YV_21665 | XKS18566.1 | OG0000785 | CP174105.1:4550244–4550699 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium ljungdahlii] |
| adhEACI7YV_08365 | XKS20133.1 | OG0001124 | CP174105.1:1791133–1793745 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium ljungdahlii] |
| adhEACI7YV_08370 | XKS20134.1 | OG0001124 | CP174105.1:1793897–1796530 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium ljungdahlii] |
| lctPACI7YV_10965 | XKS16639.1 | OG0001228 | CP174105.1:2357704–2359230 - | L-lactate permease [Clostridium ljungdahlii] |
| rnfAACI7YV_05770 | XKS19661.1 | OG0001328 | CP174105.1:1239418–1239999 + | electron transport complex protein RnfA [Clostridium ljungdahlii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.