Assembly
ASM4586519v1
BioProject PRJDB17115 · BioSample SAMD00787954
GENOME-RESOLVED EVIDENCE
GCA_045865195.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2953778 bp · GC 29.000%
Completeness 99.380% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCK092500153_26650 | BFN05958.1 | OG0000061 | AP031606.1:2823463–2824803 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldhK092500153_19940 | BFN05287.1 | OG0000131 | AP031606.1:2108606–2109556 - | L-lactate dehydrogenase [Clostridium tetani] |
| accBK092500153_26670 | BFN05960.1 | OG0000212 | AP031606.1:2825274–2825732 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium tetani] |
| hbdK092500153_23650 | BFN05658.1 | OG0000229 | AP031606.1:2509570–2510418 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK092500153_01450 | BFN03438.1 | OG0000234 | AP031606.1:176080–177255 + | acetyl-CoA C-acetyltransferase [Clostridium tetani] |
| fabZK092500153_26660 | BFN05959.1 | OG0000785 | AP031606.1:2824811–2825239 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium tetani] |
| adhEK092500153_13660 | BFN04659.1 | OG0001124 | AP031606.1:1460973–1463603 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium tetani] |
| lctPK092500153_09390 | BFN04232.1 | OG0001228 | AP031606.1:1045094–1046614 + | L-lactate permease [Clostridium tetani] |
| rnfAK092500153_09890 | BFN04282.1 | OG0001328 | AP031606.1:1097630–1098205 + | electron transport complex protein RnfA [Clostridium tetani] |
| crtK092500153_23690 | BFN05662.1 | OG0001394 | AP031606.1:2513429–2514211 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK092500153_03810 | BFN03674.1 | OG0001639 | AP031606.1:438499–439275 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| fabHK092500153_08060 | BFN04099.1 | OG0003311 | AP031606.1:909207–910217 - | 3-oxoacyl-ACP synthase III family protein [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.