Assembly
ASM4605895v1
BioProject PRJNA1191763 · BioSample SAMN45088567
GENOME-RESOLVED EVIDENCE
GCA_046058955.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3567040 bp · GC 28.500%
Completeness 96.170% · contamination 5.760%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACJ2U2_06990 | XLM71777.1 | OG0000061 | CP175543.1:1492665–1494017 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACJ2U2_13460 | XLM70083.1 | OG0000131 | CP175543.1:2938502–2939455 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACJ2U2_07000 | XLM71779.1 | OG0000212 | CP175543.1:1494451–1494942 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACJ2U2_00730 | XLM70595.1 | OG0000229 | CP175543.1:143675–144523 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACJ2U2_01345 | XLM70691.1 | OG0000234 | CP175543.1:261631–262809 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACJ2U2_06995 | XLM71778.1 | OG0000785 | CP175543.1:1494029–1494448 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACJ2U2_14925 | XLM70332.1 | OG0001124 | CP175543.1:3236966–3239563 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACJ2U2_12360 | XLM69879.1 | OG0001228 | CP175543.1:2683406–2684929 - | L-lactate permease [Clostridium perfringens] |
| crtACJ2U2_00710 | XLM70591.1 | OG0001394 | CP175543.1:139766–140548 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACJ2U2_13500 | XLM70091.1 | OG0001639 | CP175543.1:2949336–2950112 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.