Assembly
ASM4612763v1
BioProject PRJNA1160786 · BioSample SAMN43911499
GENOME-RESOLVED EVIDENCE
GCA_046127635.1
Clostridium caseinilyticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3945933 bp · GC 27.500%
Completeness 99.380% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACFLKC_17490 | XLQ84652.1 | OG0000061 | CP175916.1:3797656–3799002 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium caseinilyticum] |
| ldhACFLKC_07065 | XLQ86040.1 | OG0000131 | CP175916.1:1558579–1559535 - | L-lactate dehydrogenase [Clostridium caseinilyticum] |
| accBACFLKC_17500 | XLQ84654.1 | OG0000212 | CP175916.1:3799488–3799964 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium caseinilyticum] |
| hbdACFLKC_15180 | XLQ84248.1 | OG0000229 | CP175916.1:3326793–3327623 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium caseinilyticum] |
| thlACFLKC_15175 | XLQ84247.1 | OG0000234 | CP175916.1:3325590–3326768 - | acetyl-CoA C-acetyltransferase [Clostridium caseinilyticum] |
| fabZACFLKC_17495 | XLQ84653.1 | OG0000785 | CP175916.1:3799034–3799468 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium caseinilyticum] |
| adhEACFLKC_01520 | XLQ85014.1 | OG0001124 | CP175916.1:318338–320926 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium caseinilyticum] |
| lctPACFLKC_04775 | XLQ85607.1 | OG0001228 | CP175916.1:1031550–1033073 + | L-lactate permease [Clostridium caseinilyticum] |
| rnfAACFLKC_01670 | XLQ86394.1 | OG0001328 | CP175916.1:356240–356818 + | electron transport complex protein RnfA [Clostridium caseinilyticum] |
| crtACFLKC_15185 | XLQ84249.1 | OG0001639 | CP175916.1:3327643–3328425 - | short-chain-enoyl-CoA hydratase [Clostridium caseinilyticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.