Assembly
ASM4612764v1
BioProject PRJNA1160786 · BioSample SAMN43911498
GENOME-RESOLVED EVIDENCE
GCA_046127645.1
Clostridium caseinilyticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3887325 bp · GC 27.500%
Completeness 99.380% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACFLKB_03250 | XLQ92012.1 | OG0000061 | CP175919.1:663222–664568 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. FAM 1755] |
| ldhACFLKB_10930 | XLQ90160.1 | OG0000131 | CP175919.1:2335828–2336784 - | L-lactate dehydrogenase [Clostridium sp. FAM 1755] |
| accBACFLKB_03260 | XLQ92014.1 | OG0000212 | CP175919.1:665054–665530 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. FAM 1755] |
| hbdACFLKB_00625 | XLQ91548.1 | OG0000229 | CP175919.1:147923–148753 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. FAM 1755] |
| thlACFLKB_00620 | XLQ91547.1 | OG0000234 | CP175919.1:146720–147898 - | acetyl-CoA C-acetyltransferase [Clostridium sp. FAM 1755] |
| fabZACFLKB_03255 | XLQ92013.1 | OG0000785 | CP175919.1:664600–665034 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. FAM 1755] |
| adhEACFLKB_05395 | XLQ92374.1 | OG0001124 | CP175919.1:1095347–1097935 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. FAM 1755] |
| lctPACFLKB_08650 | XLQ92971.1 | OG0001228 | CP175919.1:1809679–1811202 + | L-lactate permease [Clostridium sp. FAM 1755] |
| rnfAACFLKB_05545 | XLQ92401.1 | OG0001328 | CP175919.1:1133269–1133847 + | electron transport complex protein RnfA [Clostridium sp. FAM 1755] |
| crtACFLKB_00630 | XLQ91549.1 | OG0001639 | CP175919.1:148773–149555 - | short-chain-enoyl-CoA hydratase [Clostridium sp. FAM 1755] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.