Assembly
ASM4612765v1
BioProject PRJNA1160786 · BioSample SAMN43911500
GENOME-RESOLVED EVIDENCE
GCA_046127655.1
Clostridium caseinilyticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3768765 bp · GC 27.500%
Completeness 99.380% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACFLKA_02135 | XLQ88525.1 | OG0000061 | CP175915.1:410997–412343 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium caseinilyticum] |
| ldhACFLKA_09930 | XLQ86735.1 | OG0000131 | CP175915.1:2101575–2102531 - | L-lactate dehydrogenase [Clostridium caseinilyticum] |
| accBACFLKA_02145 | XLQ88527.1 | OG0000212 | CP175915.1:412829–413305 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium caseinilyticum] |
| hbdACFLKA_16890 | XLQ88055.1 | OG0000229 | CP175915.1:3682258–3683088 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium caseinilyticum] |
| thlACFLKA_16885 | XLQ88054.1 | OG0000234 | CP175915.1:3681055–3682233 - | acetyl-CoA C-acetyltransferase [Clostridium caseinilyticum] |
| fabZACFLKA_02140 | XLQ88526.1 | OG0000785 | CP175915.1:412375–412809 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium caseinilyticum] |
| adhEACFLKA_04210 | XLQ88875.1 | OG0001124 | CP175915.1:835881–838469 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium caseinilyticum] |
| lctPACFLKA_07430 | XLQ89461.1 | OG0001228 | CP175915.1:1559245–1560768 + | L-lactate permease [Clostridium caseinilyticum] |
| rnfAACFLKA_04370 | XLQ88906.1 | OG0001328 | CP175915.1:877291–877869 + | electron transport complex protein RnfA [Clostridium caseinilyticum] |
| crtACFLKA_16895 | XLQ88056.1 | OG0001639 | CP175915.1:3683108–3683890 - | short-chain-enoyl-CoA hydratase [Clostridium caseinilyticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.