Assembly
ASM4624435v1
BioProject PRJNA1186713 · BioSample SAMN44770367
GENOME-RESOLVED EVIDENCE
GCA_046244355.1
Eubacterium sp. F2 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2425940 bp · GC 50.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_409336163.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 107.700 / 0.95100 | Profile only |
| accCWP_409336162.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 629.800 / 0.99300 | Annotation: gene_symbol |
| adhEWP_409337481.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1160.000 / 0.99300 | Bridge orthogroup OG0002334 |
| crtWP_409336123.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 359.800 / 0.99200 | Bridge orthogroup OG0002531 |
| fabFWP_409336158.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 563.700 / 0.99000 | Annotation: gene_symbol |
| fabGWP_409336758.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 253.600 / 0.96800 | Bridge orthogroup OG0000008 |
| fabZWP_409336757.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 173.600 / 0.76000 | Bridge orthogroup OG0000074 |
| hbdWP_409336857.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 245.500 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_409337639.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 641.800 / 0.98200 | Bridge orthogroup OG0000731 |
| rnfAWP_409337505.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 250.900 / 0.99000 | Bridge orthogroup OG0001169 |
| rnfBWP_409337506.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 272.900 / 0.96400 | Bridge orthogroup OG0001404 |
| rnfCWP_409337502.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 317.700 / 0.74400 | Bridge orthogroup OG0001114 |
| rnfDWP_409337503.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 334.300 / 0.94100 | Bridge orthogroup OG0001182 |
| rnfEWP_178263045.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 268.300 / 0.96600 | Bridge orthogroup OG0001153 |
| thlWP_409336128.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 429.000 / 0.98700 | Bridge orthogroup OG0000010 |
| etfAWP_409336127.1 · acryloyl-CoA reductase electron transfer subunit beta | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 247.200 / 0.61300 | Profile only |
| fabZWP_409336055.1 · acyl-CoA dehydratase activase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 58.900 / 0.93400 | Profile only |
| fabZWP_409337428.1 · double-cubane-cluster-containing anaerobic reductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 45.500 / 0.68300 | Profile only |
| accAWP_409336161.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 368.600 / 0.96700 | Profile only |
| accCWP_409336894.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 520.600 / 0.98900 | Profile only |
| bcdWP_409336124.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 590.000 / 0.99500 | Profile only |
| etfBWP_409336126.1 · acryloyl-CoA reductase electron transfer subunit gamma | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 308.400 / 1.00000 | Profile only |
| fabGWP_409336806.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 74.000 / 0.79400 | Bridge orthogroup OG0000242 |
| fabHWP_409336160.1 · beta-ketoacyl-ACP synthase 3 | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 233.500 / 0.98200 | Profile only |
| fabLWP_409336758.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 221.900 / 0.96400 | Profile only |
| hbdWP_178262898.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 382.200 / 0.99300 | Profile only |
| ldhWP_409336927.1 · lactate/malate family dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 303.100 / 0.98400 | Profile only |
| ldhWP_409337601.1 · lactate/malate family dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 292.200 / 0.96800 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.