Assembly
ASM4652392v1
BioProject PRJNA1180711 · BioSample SAMN44526655
GENOME-RESOLVED EVIDENCE
GCA_046523925.1
Caproicibacterium sp. XB1 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3005941 bp · GC 52.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 4/6 | 0.667 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_275846357.1 · acetyl-CoA carboxylase carboxyl transferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 342.700 / 0.96000 | Bridge orthogroup OG0001120 |
| accBWP_275846363.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 150.200 / 0.98100 | Annotation: gene_symbol |
| accCWP_275846359.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 647.000 / 0.98900 | Annotation: gene_symbol |
| accDWP_316935187.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 394.300 / 0.90400 | Bridge orthogroup OG0000844 |
| crtWP_275844395.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 332.400 / 0.95400 | Bridge orthogroup OG0002531 |
| fabFWP_275846365.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 544.800 / 0.99000 | Annotation: gene_symbol |
| fabGWP_275846367.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 243.900 / 0.97600 | Bridge orthogroup OG0000008 |
| fabKWP_275846371.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 486.700 / 0.99700 | Annotation: gene_symbol |
| rnfBWP_275845297.1 · RnfABCDGE type electron transport complex subunit A | High | Approved candidatestrong profile and bridge orthogroup support | 239.400 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_275845289.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 330.600 / 0.73900 | Bridge orthogroup OG0001114 |
| rnfDWP_275845291.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 359.100 / 0.93500 | Bridge orthogroup OG0001182 |
| rnfEWP_275845295.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 264.700 / 0.93800 | Bridge orthogroup OG0001153 |
| fabZWP_275844365.1 · acyl-CoA dehydratase activase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 73.900 / 0.93400 | Profile only |
| accBWP_275845011.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 79.800 / 0.54300 | Bridge orthogroup OG0000034 |
| bcdWP_275844397.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 614.000 / 0.99200 | Profile only |
| bcdWP_275844823.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 574.600 / 0.99700 | Profile only |
| bcdWP_275844582.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 446.600 / 0.99700 | Profile only |
| etfAWP_275844399.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 446.200 / 0.98800 | Profile only |
| etfAWP_275844580.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 335.600 / 0.99100 | Profile only |
| etfBWP_275844398.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 350.800 / 1.00000 | Profile only |
| etfBWP_275844581.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 264.800 / 0.99600 | Profile only |
| fabGWP_275845745.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 252.300 / 0.97200 | Profile only |
| fabGWP_275844129.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 208.300 / 0.96800 | Profile only |
| fabGWP_275844357.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.300 / 0.98400 | Profile only |
| fabGWP_275844854.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 95.300 / 0.79400 | Bridge orthogroup OG0000242 |
| fabHWP_275846375.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 243.700 / 0.98500 | Profile only |
| fabLWP_275846367.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 205.900 / 0.97200 | Profile only |
| fabLWP_275844129.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.600 / 0.96000 | Profile only |
| fabLWP_275845745.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.600 / 0.96400 | Profile only |
| fabLWP_275844357.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.000 / 0.97200 | Profile only |
| fabZWP_275846361.1 · 3-hydroxyacyl-ACP dehydratase FabZ family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 78.400 / 0.74900 | Bridge orthogroup OG0000074 |
| hbdWP_275844396.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 410.500 / 0.98200 | Profile only |
| ldhWP_275845598.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 408.900 / 0.98100 | Profile only |
| ldhWP_275846883.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 341.500 / 0.98400 | Profile only |
| rnfAWP_275845297.1 · RnfABCDGE type electron transport complex subunit A | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 232.100 / 0.99500 | Profile only |
| thlWP_275844394.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 590.000 / 0.99500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.