Assembly
ASM4658125v1
BioProject PRJNA1178687 · BioSample SAMN44476141
GENOME-RESOLVED EVIDENCE
GCA_046581255.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3950242 bp · GC 28.500%
Completeness 99.130% · contamination 2.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACH36K_15655 | XLF02147.1 | OG0000061 | CP174370.1:3342397–3343740 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. MB05] |
| ldhACH36K_14280 | XLF01879.1 | OG0000131 | CP174370.1:3053857–3054795 - | L-lactate dehydrogenase [Clostridium sp. MB05] |
| accBACH36K_15665 | XLF02149.1 | OG0000212 | CP174370.1:3344183–3344686 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. MB05] |
| hbdACH36K_03935 | XLF03361.1 | OG0000229 | CP174370.1:783595–784437 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. MB05] |
| thlACH36K_05475 | XLF03656.1 | OG0000234 | CP174370.1:1154729–1155910 + | acetyl-CoA C-acetyltransferase [Clostridium sp. MB05] |
| thlACH36K_18225 | XLF02629.1 | OG0000234 | CP174370.1:3875032–3876213 - | acetyl-CoA C-acetyltransferase [Clostridium sp. MB05] |
| fabZACH36K_15660 | XLF02148.1 | OG0000785 | CP174370.1:3343756–3344172 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. MB05] |
| adhEACH36K_08185 | XLF04176.1 | OG0001124 | CP174370.1:1758248–1760872 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. MB05] |
| crtACH36K_03915 | XLF03357.1 | OG0001394 | CP174370.1:779596–780378 + | short-chain-enoyl-CoA hydratase [Clostridium sp. MB05] |
| accCACH36K_04765 | XLF03520.1 | OG0005730 | CP174370.1:984123–985274 + | acetyl-CoA carboxylase biotin carboxylase subunit family protein [Clostridium sp. MB05] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.