Assembly
ASM4715006v1
BioProject PRJDB14641 · BioSample SAMD00561051
GENOME-RESOLVED EVIDENCE
GCA_047150065.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3746887 bp · GC 28.500%
Completeness 96.930% · contamination 4.190%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfB | Rnf complex subunit B | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCSNUCP2_16070 | BDU88524.1 | OG0000061 | AP027090.1:1746859–1748211 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens A] |
| ldh1SNUCP2_01680 | BDU87085.1 | OG0000131 | AP027090.1:201616–202569 - | L-lactate dehydrogenase 1 [Clostridium perfringens A] |
| hbdSNUCP2_29270 | BDU89844.1 | OG0000229 | AP027090.1:3187047–3187895 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens A] |
| thlASNUCP2_28300 | BDU89747.1 | OG0000234 | AP027090.1:3068920–3070098 - | acetyl-CoA acetyltransferase [Clostridium perfringens A] |
| glcASNUCP2_04460 | BDU87363.1 | OG0001228 | AP027090.1:504715–506238 + | L-lactate permease [Clostridium perfringens A] |
| crt_2SNUCP2_29310 | BDU89848.1 | OG0001394 | AP027090.1:3191022–3191804 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens A] |
| rnfBSNUCP2_15980 | BDU88515.1 | OG0001429 | AP027090.1:1739884–1740705 + | electron transport complex protein RnfB [Clostridium perfringens A] |
| crt_1SNUCP2_01190 | BDU87036.1 | OG0001639 | AP027090.1:159410–160186 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens A] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.