Assembly
ASM4715011v1
BioProject PRJDB14642 · BioSample SAMD00561050
GENOME-RESOLVED EVIDENCE
GCA_047150115.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3368037 bp · GC 28.500%
Completeness 97.210% · contamination 3.370%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfB | Rnf complex subunit B | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCSNUCP3_12860 | BDU85222.1 | OG0000061 | AP027086.1:1496557–1497909 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens A] |
| ldh1SNUCP3_01050 | BDU84041.1 | OG0000131 | AP027086.1:151393–152346 - | L-lactate dehydrogenase 1 [Clostridium perfringens A] |
| hbdSNUCP3_24600 | BDU86396.1 | OG0000229 | AP027086.1:2816716–2817564 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens A] |
| thlASNUCP3_23510 | BDU86287.1 | OG0000234 | AP027086.1:2690698–2691876 - | acetyl-CoA acetyltransferase [Clostridium perfringens A] |
| glcASNUCP3_03130 | BDU84249.1 | OG0001228 | AP027086.1:398998–400521 + | L-lactate permease [Clostridium perfringens A] |
| crt_2SNUCP3_24640 | BDU86400.1 | OG0001394 | AP027086.1:2820691–2821473 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens A] |
| rnfBSNUCP3_12770 | BDU85213.1 | OG0001429 | AP027086.1:1489583–1490404 + | electron transport complex protein RnfB [Clostridium perfringens A] |
| crt_1SNUCP3_00970 | BDU84033.1 | OG0001639 | AP027086.1:140744–141520 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens A] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.