Assembly
118465
BioProject PRJNA1183286 · BioSample SAMN44619179
GENOME-RESOLVED EVIDENCE
GCA_047456275.1
Acetobacterium carbinolicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4094424 bp · GC 42.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_111886984.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 388.900 / 0.96000 | Bridge orthogroup OG0001120 |
| accBWP_414151800.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 130.100 / 0.98800 | Annotation: gene_symbol |
| accCWP_414151799.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 645.600 / 0.99300 | Annotation: gene_symbol |
| accDWP_111886983.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 386.400 / 0.97600 | Bridge orthogroup OG0000844 |
| adhEWP_414150654.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1434.900 / 0.99700 | Bridge orthogroup OG0002334 |
| coatWP_111889304.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 272.600 / 0.94900 | Annotation: specific_product_name |
| coatWP_111889303.1 · CoA transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 93.300 / 0.79700 | Bridge orthogroup OG0000263 |
| etfAWP_111889078.1 · lactate dehydrogenase subunit LctC | High | Approved candidatestrong profile and bridge orthogroup support | 436.200 / 0.97000 | Bridge orthogroup OG0002903 |
| etfBWP_111889077.1 · lactate dehydrogenase subunit LctB | High | Approved candidatestrong profile and bridge orthogroup support | 330.400 / 1.00000 | Bridge orthogroup OG0002348 |
| fabFWP_414151801.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 561.600 / 0.99000 | Annotation: gene_symbol |
| fabGWP_111888479.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 251.200 / 0.99200 | Bridge orthogroup OG0000008 |
| fabGWP_414151802.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 242.900 / 0.99200 | Bridge orthogroup OG0000008 |
| fabZWP_111886982.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 94.400 / 0.74900 | Bridge orthogroup OG0000074 |
| lctPWP_322519726.1 · lactate permease LctP family transporter | High | Approved candidatestrong profile and bridge orthogroup support | 778.600 / 0.99000 | Bridge orthogroup OG0000731 |
| rnfAWP_111886578.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 290.100 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_111886579.1 · 4Fe-4S binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 292.000 / 0.95700 | Bridge orthogroup OG0001404 |
| rnfCWP_322518976.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 392.500 / 0.74600 | Bridge orthogroup OG0001114 |
| rnfCWP_414150523.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 338.700 / 0.73900 | Bridge orthogroup OG0001114 |
| rnfDWP_414150168.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 380.100 / 0.95000 | Bridge orthogroup OG0001182 |
| rnfEWP_111886577.1 · RnfABCDGE type electron transport complex subunit E | High | Approved candidatestrong profile and bridge orthogroup support | 275.100 / 0.92300 | Bridge orthogroup OG0001153 |
| fabGWP_414151441.1 · SDR family NAD(P)-dependent oxidoreductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 94.300 / 0.79800 | Profile only |
| accCWP_414151331.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 524.100 / 0.98700 | Profile only |
| fabGWP_414150116.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 257.600 / 1.00000 | Profile only |
| fabGWP_414151145.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 228.500 / 0.99200 | Profile only |
| fabGWP_414150193.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 223.700 / 0.98000 | Profile only |
| fabGWP_414150368.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 204.200 / 0.98800 | Profile only |
| fabGWP_414151299.1 · glucose 1-dehydrogenase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.600 / 0.97200 | Bridge orthogroup OG0000008 |
| fabHWP_111886975.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 242.700 / 0.98800 | Profile only |
| fabKWP_111886977.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 468.100 / 0.99700 | Profile only |
| fabLWP_111888479.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.600 / 0.97200 | Profile only |
| fabLWP_414151145.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.200 / 0.98400 | Profile only |
| fabLWP_414150116.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.100 / 0.96800 | Profile only |
| fabLWP_414151299.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.700 / 0.96400 | Profile only |
| fabLWP_414150193.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.400 / 0.98000 | Profile only |
| fabLWP_414150368.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.300 / 0.97200 | Profile only |
| hbdWP_111888481.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 329.600 / 0.99600 | Profile only |
| rnfCWP_111887713.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 543.900 / 0.99100 | Profile only |
| rnfCWP_111887101.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 506.500 / 0.99300 | Profile only |
| fabLWP_414151802.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 204.000 / 0.97600 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.