Assembly
57435
BioProject PRJNA1182648 · BioSample SAMN44600126
GENOME-RESOLVED EVIDENCE
GCA_047456285.1
Acetobacterium malicum subsp. dehalogenans DSM 11527 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4140558 bp · GC 44.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_026395812.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 396.300 / 0.96000 | Bridge orthogroup OG0001120 |
| accBWP_026395816.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 130.900 / 0.98800 | Annotation: gene_symbol |
| accCWP_026395814.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 645.300 / 0.99300 | Annotation: gene_symbol |
| accDWP_026395813.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 394.100 / 0.97300 | Bridge orthogroup OG0000844 |
| bcdWP_026394031.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 464.900 / 1.00000 | Annotation: bcd_etfAB_neighborhood |
| coatWP_035355697.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 264.600 / 0.94000 | Annotation: specific_product_name |
| coatWP_035355700.1 · CoA transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 88.900 / 0.79300 | Bridge orthogroup OG0000263 |
| etfAWP_026395077.1 · lactate dehydrogenase subunit LctC | High | Approved candidatestrong profile and bridge orthogroup support | 432.500 / 0.97000 | Bridge orthogroup OG0002903 |
| etfAWP_051355675.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 425.600 / 0.99100 | Bridge orthogroup OG0001385 |
| etfBWP_026394032.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 365.100 / 0.99200 | Bridge orthogroup OG0001139 |
| etfBWP_026395078.1 · lactate dehydrogenase subunit LctB | High | Approved candidatestrong profile and bridge orthogroup support | 329.100 / 1.00000 | Bridge orthogroup OG0002348 |
| fabFWP_026395817.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 556.000 / 0.98600 | Annotation: gene_symbol |
| fabGWP_026395818.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 244.000 / 0.99200 | Bridge orthogroup OG0000008 |
| fabKWP_026395820.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 472.900 / 0.99700 | Annotation: gene_symbol |
| fabZWP_026395815.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 97.500 / 0.74900 | Bridge orthogroup OG0000074 |
| lctPWP_026395075.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 777.900 / 0.99000 | Bridge orthogroup OG0000731 |
| rnfAWP_035355470.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 293.100 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfAWP_026395435.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 292.200 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_026394184.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 346.500 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfBWP_084505015.1 · 4Fe-4S binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 300.400 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfCWP_026394189.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 424.600 / 0.74800 | Bridge orthogroup OG0001114 |
| rnfCWP_026395439.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 387.200 / 0.74600 | Bridge orthogroup OG0001114 |
| rnfCWP_084505049.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 342.500 / 0.73900 | Bridge orthogroup OG0001114 |
| rnfDWP_026394188.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 562.700 / 0.95900 | Bridge orthogroup OG0001182 |
| rnfDWP_026395438.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 377.800 / 0.95000 | Bridge orthogroup OG0001182 |
| rnfEWP_026394186.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 333.000 / 0.99000 | Bridge orthogroup OG0001153 |
| rnfEWP_026395436.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 272.900 / 0.92800 | Bridge orthogroup OG0001153 |
| rnfGWP_026394187.1 · FMN-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 188.000 / 0.89700 | Bridge orthogroup OG0001292 |
| thlWP_026394036.1 · acetyl-CoA C-acyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 441.700 / 0.99700 | Bridge orthogroup OG0000010 |
| fabGWP_242834746.1 · SDR family oxidoreductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 80.500 / 0.53200 | Profile only |
| accCWP_026396082.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 522.100 / 0.98700 | Profile only |
| crtWP_026394033.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 226.500 / 1.00000 | Annotation: specific_product_name |
| fabGWP_026394953.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 252.900 / 1.00000 | Profile only |
| fabGWP_026393814.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 229.900 / 0.98000 | Profile only |
| fabGWP_051355632.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.600 / 0.98800 | Bridge orthogroup OG0000008 |
| fabGWP_242834731.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 138.000 / 0.91100 | Profile only |
| fabGWP_026393666.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 73.500 / 0.78600 | Bridge orthogroup OG0000242 |
| fabHWP_026395822.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 244.800 / 0.98500 | Profile only |
| fabLWP_026394953.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.400 / 0.96800 | Profile only |
| fabLWP_026393814.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.800 / 0.98000 | Profile only |
| fabLWP_051355632.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 147.900 / 0.97600 | Profile only |
| fabLWP_242834731.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 124.500 / 0.89700 | Profile only |
| rnfCWP_026396045.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 548.000 / 0.99100 | Profile only |
| rnfCWP_026396006.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 504.500 / 0.99100 | Profile only |
| fabLWP_026395818.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 201.400 / 0.97600 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.