Assembly
ASM4778319v1
BioProject PRJNA1219495 · BioSample SAMN46558455
GENOME-RESOLVED EVIDENCE
GCA_047783195.1
Clostridium tyrobutyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3131664 bp · GC 31.000%
Completeness 99.070% · contamination 0.780%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACMXKO_08275 | XOO31113.1 | OG0000061 | CP180725.1:1696693–1698036 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tyrobutyricum] |
| accCACMXKO_14945 | XOO32348.1 | OG0000061 | CP180725.1:3008774–3010126 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tyrobutyricum] |
| ldhACMXKO_03965 | XOO33128.1 | OG0000131 | CP180725.1:804735–805706 + | L-lactate dehydrogenase [Clostridium tyrobutyricum] |
| ldhACMXKO_05460 | XOO33406.1 | OG0000131 | CP180725.1:1108749–1109696 - | L-lactate dehydrogenase [Clostridium tyrobutyricum] |
| accBACMXKO_08280 | XOO31114.1 | OG0000212 | CP180725.1:1698039–1698482 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium tyrobutyricum] |
| accBACMXKO_14955 | XOO32350.1 | OG0000212 | CP180725.1:3010622–3011119 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium tyrobutyricum] |
| hbdACMXKO_12980 | XOO31994.1 | OG0000229 | CP180725.1:2598971–2599819 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tyrobutyricum] |
| thlACMXKO_00800 | XOO32546.1 | OG0000234 | CP180725.1:160714–161895 + | acetyl-CoA C-acetyltransferase [Clostridium tyrobutyricum] |
| fabZACMXKO_14950 | XOO32349.1 | OG0000785 | CP180725.1:3010161–3010610 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium tyrobutyricum] |
| lctPACMXKO_07420 | XOO33777.1 | OG0001228 | CP180725.1:1521706–1523232 + | L-lactate permease [Clostridium tyrobutyricum] |
| rnfAACMXKO_08630 | XOO31181.1 | OG0001328 | CP180725.1:1772883–1773461 - | electron transport complex protein RnfA [Clostridium tyrobutyricum] |
| crtACMXKO_13000 | XOO31998.1 | OG0001394 | CP180725.1:2602862–2603641 - | short-chain-enoyl-CoA hydratase [Clostridium tyrobutyricum] |
| crtACMXKO_13860 | XOO32160.1 | OG0001639 | CP180725.1:2803999–2804775 - | short-chain-enoyl-CoA hydratase [Clostridium tyrobutyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.