Assembly
ASM4782477v1
BioProject PRJNA1202116 · BioSample SAMN45951199
GENOME-RESOLVED EVIDENCE
GCA_047824775.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3840795 bp · GC 28.000%
Completeness 95.310% · contamination 6.030%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACK8RZ_07125 | XOP73770.1 | OG0000061 | CP181174.1:1611647–1612999 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACK8RZ_00685 | XOP72526.1 | OG0000131 | CP181174.1:153837–154790 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACK8RZ_07115 | XOP73768.1 | OG0000212 | CP181174.1:1610722–1611213 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACK8RZ_13385 | XOP72063.1 | OG0000229 | CP181174.1:2956363–2957211 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACK8RZ_12765 | XOP71967.1 | OG0000234 | CP181174.1:2835007–2836185 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACK8RZ_07120 | XOP73769.1 | OG0000785 | CP181174.1:1611216–1611635 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACK8RZ_14685 | XOP72293.1 | OG0001124 | CP181174.1:3214045–3216642 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACK8RZ_01705 | XOP72716.1 | OG0001228 | CP181174.1:394238–395761 + | L-lactate permease [Clostridium perfringens] |
| crtACK8RZ_13405 | XOP72067.1 | OG0001394 | CP181174.1:2960338–2961120 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACK8RZ_00645 | XOP72518.1 | OG0001639 | CP181174.1:143187–143963 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.