Assembly
UCHI_HCS.1_circular
BioProject PRJNA1139946 · BioSample SAMN43929013
GENOME-RESOLVED EVIDENCE
GCA_047900555.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3816008 bp · GC 28.000%
Completeness 99.070% · contamination 2.070%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACFYH6_12935 | XOS87487.1 | OG0000061 | CP170704.1:2720543–2721886 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. HCS.1] |
| ldhACFYH6_12340 | XOS87371.1 | OG0000131 | CP170704.1:2582870–2583808 - | L-lactate dehydrogenase [Clostridium sp. HCS.1] |
| ldhACFYH6_17190 | XOS88263.1 | OG0000131 | CP170704.1:3581983–3582933 - | L-lactate dehydrogenase [Clostridium sp. HCS.1] |
| accBACFYH6_12945 | XOS87489.1 | OG0000212 | CP170704.1:2722328–2722819 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. HCS.1] |
| hbdACFYH6_02390 | XOS88890.1 | OG0000229 | CP170704.1:486314–487156 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. HCS.1] |
| thlACFYH6_04705 | XOS89341.1 | OG0000234 | CP170704.1:1007812–1008993 + | acetyl-CoA C-acetyltransferase [Clostridium sp. HCS.1] |
| thlACFYH6_10045 | XOS86927.1 | OG0000234 | CP170704.1:2121378–2122574 - | acetyl-CoA acetyltransferase [Clostridium sp. HCS.1] |
| thlACFYH6_16015 | XOS88076.1 | OG0000234 | CP170704.1:3341202–3342383 - | acetyl-CoA C-acetyltransferase [Clostridium sp. HCS.1] |
| fabZACFYH6_12940 | XOS87488.1 | OG0000785 | CP170704.1:2721902–2722327 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. HCS.1] |
| adhEACFYH6_07955 | XOS89965.1 | OG0001124 | CP170704.1:1664222–1666849 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. HCS.1] |
| rnfAACFYH6_05785 | XOS89549.1 | OG0001328 | CP170704.1:1220824–1221414 + | electron transport complex protein RnfA [Clostridium sp. HCS.1] |
| crtACFYH6_02370 | XOS88886.1 | OG0001394 | CP170704.1:482296–483078 + | short-chain-enoyl-CoA hydratase [Clostridium sp. HCS.1] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.