Assembly
Clostridium isatidis BK32
BioProject PRJNA1227611 · BioSample SAMN46990346
GENOME-RESOLVED EVIDENCE
GCA_048319855.1
Clostridium isatidis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2978451 bp · GC 29.000%
Completeness 96.580% · contamination 2.020%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACNPWN_09475 | XPI46660.1 | OG0000061 | CP182825.1:1921918–1923261 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium isatidis] |
| ldhACNPWN_09290 | XPI46624.1 | OG0000131 | CP182825.1:1884792–1885730 - | L-lactate dehydrogenase [Clostridium isatidis] |
| accBACNPWN_09485 | XPI46662.1 | OG0000212 | CP182825.1:1923703–1924176 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium isatidis] |
| fabZACNPWN_09480 | XPI46661.1 | OG0000785 | CP182825.1:1923278–1923694 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium isatidis] |
| adhEACNPWN_06225 | XPI48735.1 | OG0001124 | CP182825.1:1248285–1250906 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium isatidis] |
| lctPACNPWN_11615 | XPI49011.1 | OG0001228 | CP182825.1:2380993–2382531 - | L-lactate permease [Clostridium isatidis] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.