Assembly
ASM4856832v1
BioProject PRJNA1229616 · BioSample SAMN47133240
GENOME-RESOLVED EVIDENCE
GCA_048568325.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3418906 bp · GC 28.500%
Completeness 98.100% · contamination 3.690%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACNUOF_06895 | XPT33541.1 | OG0000061 | CP183471.1:1561528–1562880 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACNUOF_00695 | XPT32352.1 | OG0000131 | CP183471.1:156695–157648 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACNUOF_06885 | XPT33539.1 | OG0000212 | CP183471.1:1560603–1561094 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACNUOF_13200 | XPT31891.1 | OG0000229 | CP183471.1:2935374–2936222 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACNUOF_12595 | XPT31800.1 | OG0000234 | CP183471.1:2818946–2820124 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACNUOF_06890 | XPT33540.1 | OG0000785 | CP183471.1:1561097–1561516 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACNUOF_14490 | XPT32120.1 | OG0001124 | CP183471.1:3192675–3195272 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACNUOF_01855 | XPT32569.1 | OG0001228 | CP183471.1:417621–419144 + | L-lactate permease [Clostridium perfringens] |
| crtACNUOF_13220 | XPT31895.1 | OG0001394 | CP183471.1:2939348–2940130 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACNUOF_00635 | XPT32340.1 | OG0001639 | CP183471.1:141215–141991 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.