Assembly
ASM4856833v1
BioProject PRJNA1229596 · BioSample SAMN47132551
GENOME-RESOLVED EVIDENCE
GCA_048568335.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3315121 bp · GC 28.500%
Completeness 97.930% · contamination 4.140%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACNUKZ_06535 | XPT30555.1 | OG0000061 | CP183465.1:1492600–1493952 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACNUKZ_00670 | XPT29436.1 | OG0000131 | CP183465.1:151381–152334 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACNUKZ_06525 | XPT30553.1 | OG0000212 | CP183465.1:1491675–1492166 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACNUKZ_12860 | XPT28965.1 | OG0000229 | CP183465.1:2844642–2845490 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACNUKZ_12250 | XPT28871.1 | OG0000234 | CP183465.1:2727186–2728364 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACNUKZ_06530 | XPT30554.1 | OG0000785 | CP183465.1:1492169–1492588 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACNUKZ_14245 | XPT29209.1 | OG0001124 | CP183465.1:3117792–3120389 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACNUKZ_01680 | XPT29624.1 | OG0001228 | CP183465.1:385949–387472 + | L-lactate permease [Clostridium perfringens] |
| rnfAACNUKZ_06485 | XPT30545.1 | OG0001328 | CP183465.1:1485034–1485609 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACNUKZ_12880 | XPT28969.1 | OG0001394 | CP183465.1:2848617–2849399 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACNUKZ_00630 | XPT29428.1 | OG0001639 | CP183465.1:140725–141501 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.