Assembly
ASM4856834v1
BioProject PRJNA1229601 · BioSample SAMN47132646
GENOME-RESOLVED EVIDENCE
GCA_048568345.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3418905 bp · GC 28.500%
Completeness 98.100% · contamination 3.690%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACNULB_06900 | XPT36525.1 | OG0000061 | CP183469.1:1561529–1562881 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACNULB_00695 | XPT35337.1 | OG0000131 | CP183469.1:156696–157649 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACNULB_06890 | XPT36523.1 | OG0000212 | CP183469.1:1560604–1561095 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACNULB_13205 | XPT34877.1 | OG0000229 | CP183469.1:2935374–2936222 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACNULB_12600 | XPT34785.1 | OG0000234 | CP183469.1:2818947–2820125 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACNULB_06895 | XPT36524.1 | OG0000785 | CP183469.1:1561098–1561517 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACNULB_14495 | XPT35106.1 | OG0001124 | CP183469.1:3192674–3195271 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACNULB_01855 | XPT35554.1 | OG0001228 | CP183469.1:417622–419145 + | L-lactate permease [Clostridium perfringens] |
| crtACNULB_13225 | XPT34881.1 | OG0001394 | CP183469.1:2939348–2940130 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACNULB_00635 | XPT35325.1 | OG0001639 | CP183469.1:141216–141992 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.