Assembly
ASM4857275v1
BioProject PRJNA1229605 · BioSample SAMN47132958
GENOME-RESOLVED EVIDENCE
GCA_048572755.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3540766 bp · GC 28.500%
Completeness 97.700% · contamination 3.110%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACNULX_07515 | XQA11559.1 | OG0000061 | CP183871.1:1654314–1655666 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACNULX_00870 | XQA10280.1 | OG0000131 | CP183871.1:185006–185959 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACNULX_07505 | XQA11557.1 | OG0000212 | CP183871.1:1653389–1653880 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACNULX_14410 | XQA09770.1 | OG0000229 | CP183871.1:3089818–3090666 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACNULX_13560 | XQA09632.1 | OG0000234 | CP183871.1:2932422–2933600 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACNULX_07510 | XQA11558.1 | OG0000785 | CP183871.1:1653883–1654302 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACNULX_15700 | XQA10000.1 | OG0001124 | CP183871.1:3346808–3349405 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACNULX_02205 | XQA10531.1 | OG0001228 | CP183871.1:455688–457211 + | L-lactate permease [Clostridium perfringens] |
| crtACNULX_14430 | XQA09774.1 | OG0001394 | CP183871.1:3093793–3094575 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.