Assembly
ASM4999139v1
BioProject PRJNA1252985 · BioSample SAMN48062664
GENOME-RESOLVED EVIDENCE
GCA_049991395.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4817503 bp · GC 29.000%
Completeness 96.160% · contamination 2.750%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACP1ZZ_04540 | XSB61476.1 | OG0000061 | CP188232.1:963856–965202 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCACP1ZZ_13990 | XSB59802.1 | OG0000061 | CP188232.1:2834009–2835361 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhACP1ZZ_11495 | XSB59329.1 | OG0000131 | CP188232.1:2277765–2278718 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACP1ZZ_14350 | XSB59873.1 | OG0000131 | CP188232.1:2913688–2914641 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACP1ZZ_15565 | XSB60104.1 | OG0000131 | CP188232.1:3209289–3210227 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACP1ZZ_20970 | XSB62627.1 | OG0000131 | CP188233.1:494261–495205 - | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBACP1ZZ_04535 | XSB61475.1 | OG0000212 | CP188232.1:963352–963813 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| accBACP1ZZ_14000 | XSB59804.1 | OG0000212 | CP188232.1:2835802–2836308 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdACP1ZZ_01755 | XSB60979.1 | OG0000229 | CP188232.1:371293–372141 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlACP1ZZ_02350 | XSB61067.1 | OG0000234 | CP188232.1:481423–482604 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZACP1ZZ_13995 | XSB59803.1 | OG0000785 | CP188232.1:2835370–2835798 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEACP1ZZ_18010 | XSB60556.1 | OG0001124 | CP188232.1:3824830–3827460 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPACP1ZZ_11990 | XSB59421.1 | OG0001228 | CP188232.1:2394848–2396389 - | L-lactate permease [Clostridium butyricum] |
| crtACP1ZZ_01735 | XSB60975.1 | OG0001394 | CP188232.1:367292–368077 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.