Assembly
ASM5021931v1
BioProject PRJNA868947 · BioSample SAMN30278726
GENOME-RESOLVED EVIDENCE
GCA_050219315.1
Megasphaera sueciensis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2904220 bp · GC 40.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_427114219.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 120.900 / 0.97500 | Profile only |
| accCWP_427113459.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 590.900 / 0.99100 | Annotation: gene_symbol |
| coatWP_427112662.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 241.600 / 0.97700 | Annotation: specific_product_name |
| coatWP_427113971.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 233.700 / 0.97700 | Annotation: specific_product_name |
| coatWP_427113972.1 · CoA transferase subunit A | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 100.200 / 0.70000 | Bridge orthogroup OG0000263 |
| etfBWP_427112272.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 351.300 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_427114250.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 349.100 / 0.97100 | Annotation: gene_symbol |
| fabFWP_427114202.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 596.600 / 0.99300 | Annotation: gene_symbol |
| fabGWP_427114204.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 277.100 / 0.98800 | Bridge orthogroup OG0000008 |
| fabZWP_427111763.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 142.000 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_322351520.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | High | Approved candidatestrong profile and bridge orthogroup support | 300.700 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_427114227.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 579.100 / 0.98400 | Bridge orthogroup OG0000731 |
| rnfAWP_322351607.1 · RnfABCDGE type electron transport complex subunit A | High | Approved candidatestrong profile and bridge orthogroup support | 280.600 / 0.99000 | Bridge orthogroup OG0001169 |
| rnfBWP_322351606.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 313.700 / 0.94600 | Bridge orthogroup OG0001404 |
| rnfCWP_427114078.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 408.300 / 0.78000 | Bridge orthogroup OG0001114 |
| rnfDWP_427114077.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 530.700 / 0.99100 | Bridge orthogroup OG0001182 |
| rnfEWP_322351608.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 308.100 / 0.98600 | Bridge orthogroup OG0001153 |
| rnfGWP_322351609.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 216.300 / 0.91200 | Bridge orthogroup OG0001292 |
| thlWP_427112855.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 622.000 / 0.99700 | Bridge orthogroup OG0005114 |
| thlWP_322351505.1 · acetyl-CoA C-acyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 565.200 / 0.99700 | Bridge orthogroup OG0005114 |
| fabGWP_427112497.1 · SDR family NAD(P)-dependent oxidoreductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 83.700 / 0.77400 | Profile only |
| accBWP_427113145.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 67.900 / 0.89500 | Bridge orthogroup OG0000034 |
| accCWP_427114115.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 498.100 / 0.98200 | Profile only |
| accCWP_427113351.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 490.300 / 0.98400 | Profile only |
| bcdWP_427113688.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 585.300 / 0.99700 | Profile only |
| bcdWP_427112271.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 567.700 / 1.00000 | Profile only |
| bcdWP_427113448.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 567.500 / 1.00000 | Profile only |
| bcdWP_427112667.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 557.900 / 1.00000 | Profile only |
| bcdWP_427113038.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 495.600 / 0.98900 | Profile only |
| bcdWP_427113222.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 455.600 / 0.99500 | Profile only |
| crtWP_427113670.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 369.700 / 1.00000 | Annotation: specific_product_name |
| crtWP_427112668.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 369.000 / 1.00000 | Annotation: specific_product_name |
| crtWP_427113040.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 349.900 / 0.99600 | Annotation: specific_product_name |
| crtWP_427112660.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.500 / 1.00000 | Annotation: specific_product_name |
| etfAWP_427112664.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 442.000 / 0.99100 | Profile only |
| etfAWP_427114218.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 440.900 / 0.99100 | Profile only |
| etfAWP_427112273.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 439.400 / 0.98500 | Profile only |
| etfAWP_427113266.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 333.200 / 0.97600 | Profile only |
| etfBWP_427113265.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 244.800 / 1.00000 | Profile only |
| fabGWP_427112359.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 235.000 / 0.99600 | Profile only |
| fabGWP_427113879.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.900 / 0.98800 | Profile only |
| fabGWP_427111914.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.400 / 0.98400 | Profile only |
| fabGWP_427113719.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.400 / 0.97600 | Profile only |
| fabGWP_427111874.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.300 / 0.99200 | Profile only |
| fabGWP_427112589.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 85.900 / 0.80600 | Bridge orthogroup OG0000242 |
| fabHWP_427114252.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 311.200 / 0.98200 | Profile only |
| fabHWP_427111875.1 · ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 252.900 / 0.99700 | Profile only |
| fabKWP_427114203.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 224.700 / 0.93300 | Profile only |
| fabLWP_427114204.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 226.900 / 0.97200 | Profile only |
| fabLWP_427112359.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 181.100 / 0.99200 | Profile only |
| fabLWP_427113879.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 181.000 / 0.98400 | Profile only |
| fabLWP_427111914.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 170.700 / 0.97600 | Profile only |
| fabLWP_427113719.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.400 / 0.97200 | Profile only |
| fabLWP_427111874.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 151.500 / 0.98000 | Profile only |
| hbdWP_322351586.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 401.100 / 0.98900 | Profile only |
| lctPWP_427113708.1 · L-lactate permease | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 386.000 / 0.99000 | Profile only |
| ldhWP_427112364.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 304.000 / 0.98400 | Profile only |
| ldhWP_427112317.1 · lactate/malate family dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 278.200 / 0.99400 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.