Assembly
ASM5036699v1
BioProject PRJNA1259948 · BioSample SAMN48382298
GENOME-RESOLVED EVIDENCE
GCA_050366995.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4708966 bp · GC 29.000%
Completeness 96.180% · contamination 2.710%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACQR2L_12990 | XTP12081.1 | OG0000061 | CP191154.1:2730062–2731414 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhACQR2L_10345 | XTP11577.1 | OG0000131 | CP191154.1:2171531–2172484 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACQR2L_13345 | XTP12151.1 | OG0000131 | CP191154.1:2807772–2808725 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACQR2L_14935 | XTP12453.1 | OG0000131 | CP191154.1:3175275–3176213 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACQR2L_20240 | XTP14919.1 | OG0000131 | CP191155.1:516662–517606 + | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBACQR2L_13000 | XTP12083.1 | OG0000212 | CP191154.1:2731855–2732361 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdACQR2L_01915 | XTP13359.1 | OG0000229 | CP191154.1:406972–407820 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlACQR2L_02525 | XTP13451.1 | OG0000234 | CP191154.1:519853–521034 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZACQR2L_12995 | XTP12082.1 | OG0000785 | CP191154.1:2731423–2731851 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEACQR2L_17405 | XTP12913.1 | OG0001124 | CP191154.1:3791828–3794458 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPACQR2L_10790 | XTP11665.1 | OG0001228 | CP191154.1:2275881–2277422 - | L-lactate permease [Clostridium butyricum] |
| crtACQR2L_01895 | XTP13355.1 | OG0001394 | CP191154.1:402971–403756 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.