Assembly
ASM5090823v1
BioProject PRJNA1271552 · BioSample SAMN48875516
GENOME-RESOLVED EVIDENCE
GCA_050908235.1
Pseudoramibacter alactolyticus · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2354012 bp · GC 51.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_006599095.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 364.600 / 0.96000 | Bridge orthogroup OG0001120 |
| accBWP_006599092.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 110.400 / 0.99400 | Annotation: gene_symbol |
| accCWP_006599093.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 630.500 / 0.99600 | Annotation: gene_symbol |
| accDWP_006599094.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 347.300 / 0.98000 | Bridge orthogroup OG0000844 |
| crtWP_006599088.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 340.200 / 0.98100 | Bridge orthogroup OG0002531 |
| etfAWP_006599134.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 428.400 / 0.97900 | Bridge orthogroup OG0001385 |
| etfBWP_006599133.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 336.900 / 0.99600 | Bridge orthogroup OG0001139 |
| fabFWP_006599100.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 579.500 / 0.99500 | Annotation: gene_symbol |
| fabGWP_006599099.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 258.800 / 0.96400 | Bridge orthogroup OG0000008 |
| fabZWP_006599101.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 169.000 / 0.77600 | Bridge orthogroup OG0000074 |
| lctPWP_006598954.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 677.300 / 0.98800 | Bridge orthogroup OG0000731 |
| rnfAWP_006598263.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 282.600 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_040640249.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 338.500 / 0.94600 | Bridge orthogroup OG0001404 |
| rnfDWP_006598266.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 387.200 / 0.94100 | Bridge orthogroup OG0001182 |
| rnfEWP_006598264.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 274.900 / 0.95700 | Bridge orthogroup OG0001153 |
| rnfGWP_006598265.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 143.100 / 0.91800 | Bridge orthogroup OG0001292 |
| fabZWP_006599606.1 · acyl-CoA dehydratase activase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 73.200 / 0.93400 | Profile only |
| accCWP_006597718.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 523.300 / 0.98900 | Profile only |
| bcdWP_006599111.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 479.400 / 0.99700 | Profile only |
| bcdWP_006599453.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 453.000 / 0.99700 | Profile only |
| bcdWP_006598950.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 449.900 / 0.99500 | Profile only |
| bcdWP_040640021.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 441.900 / 0.99200 | Profile only |
| crtWP_083798171.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.700 / 0.99600 | Annotation: specific_product_name |
| fabGWP_040639907.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 222.300 / 1.00000 | Profile only |
| fabGWP_006599410.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 201.100 / 0.97200 | Profile only |
| fabGWP_006598875.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.000 / 0.98000 | Profile only |
| fabGWP_006598396.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.700 / 0.98400 | Profile only |
| fabGWP_006597720.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.500 / 0.98800 | Profile only |
| fabGWP_006599703.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.400 / 0.97600 | Profile only |
| fabGWP_006599403.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 165.300 / 0.99200 | Bridge orthogroup OG0000008 |
| fabGWP_006599008.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 85.000 / 0.86300 | Bridge orthogroup OG0000242 |
| fabGWP_006599148.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 82.100 / 0.76200 | Bridge orthogroup OG0000242 |
| fabHWP_006599096.1 · beta-ketoacyl-ACP synthase 3 | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 218.200 / 0.98800 | Profile only |
| fabKWP_006599097.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 438.300 / 0.98100 | Profile only |
| fabKWP_006599409.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 276.800 / 0.98700 | Profile only |
| fabLWP_006599099.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 228.400 / 0.98800 | Profile only |
| fabLWP_006599410.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.000 / 0.98000 | Profile only |
| fabLWP_040639907.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.900 / 0.97200 | Profile only |
| fabLWP_006598875.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.900 / 0.98400 | Profile only |
| fabLWP_006599703.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.200 / 0.96400 | Profile only |
| fabLWP_006598396.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 159.000 / 0.97200 | Profile only |
| fabLWP_006599403.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 157.800 / 0.98400 | Profile only |
| fabLWP_006597720.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 157.100 / 0.99200 | Profile only |
| hbdWP_006599087.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 396.400 / 0.98900 | Profile only |
| ldhWP_006598872.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 410.300 / 0.98700 | Profile only |
| rnfCWP_006599396.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 539.300 / 0.98900 | Profile only |
| rnfCWP_006599046.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 414.700 / 0.99100 | Profile only |
| thlWP_040639986.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 578.200 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.