Assembly
ASM5091663v1
BioProject PRJNA1088936 · BioSample SAMN40507131
GENOME-RESOLVED EVIDENCE
GCA_050916635.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3282695 bp · GC 28.500%
Completeness 96.670% · contamination 3.940%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWNP11_05990 | XVK88731.1 | OG0000061 | CP150433.1:1278240–1279592 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWNP11_11995 | XVK87082.1 | OG0000131 | CP150433.1:2661023–2661976 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWNP11_06000 | XVK88733.1 | OG0000212 | CP150433.1:1280026–1280517 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWNP11_14805 | XVK87568.1 | OG0000229 | CP150433.1:3227664–3228512 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWNP11_00480 | XVK87678.1 | OG0000234 | CP150433.1:75520–76698 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWNP11_05995 | XVK88732.1 | OG0000785 | CP150433.1:1279604–1280023 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWNP11_13505 | XVK87339.1 | OG0001124 | CP150433.1:2968316–2970913 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWNP11_10885 | XVK86876.1 | OG0001228 | CP150433.1:2403462–2404985 - | L-lactate permease [Clostridium perfringens] |
| crtWNP11_14785 | XVK87564.1 | OG0001394 | CP150433.1:3223755–3224537 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWNP11_12035 | XVK87090.1 | OG0001639 | CP150433.1:2671857–2672633 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.