Assembly
ASM5091664v1
BioProject PRJNA1088936 · BioSample SAMN40507130
GENOME-RESOLVED EVIDENCE
GCA_050916645.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3275124 bp · GC 28.500%
Completeness 97.310% · contamination 2.370%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWNP12_14580 | XVK90397.1 | OG0000061 | CP150434.1:3206607–3207959 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWNP12_08675 | XVK89265.1 | OG0000131 | CP150434.1:1844983–1845936 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWNP12_14570 | XVK90395.1 | OG0000212 | CP150434.1:3205682–3206173 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWNP12_05895 | XVK91578.1 | OG0000229 | CP150434.1:1285908–1286756 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWNP12_05285 | XVK91483.1 | OG0000234 | CP150434.1:1168451–1169629 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWNP12_14575 | XVK90396.1 | OG0000785 | CP150434.1:3206176–3206595 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWNP12_07195 | XVK91808.1 | OG0001124 | CP150434.1:1543204–1545801 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWNP12_09760 | XVK89467.1 | OG0001228 | CP150434.1:2098185–2099708 + | L-lactate permease [Clostridium perfringens] |
| rnfAWNP12_14530 | XVK90387.1 | OG0001328 | CP150434.1:3199041–3199616 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtWNP12_05915 | XVK91582.1 | OG0001394 | CP150434.1:1289883–1290665 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWNP12_08635 | XVK89257.1 | OG0001639 | CP150434.1:1834325–1835101 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.